RNA id: XM_026927255.2


Basic Information

Item Value
RNA id XM_026927255.2
length 3389
RNA type mRNA
GC content 0.56
exon number 24
gene id frmd4a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7847835 ~ 7976917 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTTCGTTCTCCCGTGGGGCACTTATAGGAAAGAAGGGATGATGAAGGACATTAAAGGAGAAGAGACCGGTGCCTGAGGACCCCTACCTGCTCACACACCTGCACTGAAGAGGGATTACCTGTCCTccacacctgtgtgtgtttctaagcTATGGAGGCTGTACTTTTAAGTCtagaggagagtgtgtgtggggggcaGAGTGTGTTCTGGGATCTGACTTCAGCTGCTCTCAGGAGACTGAGGCACACACACCTACTGTATAATACTGTCTACCAGatgaCGGAGGGCCGGAGATGTCAGGTCCATCTCCTGGACGACAGGAAATTGGAGCTCCTTGTGCAGCCCAAGCTGATGGCTAAGGACCTGCTGGATCTGGTAGCGTCACACTTCaacctgaaagagaaagagtatTTTGGAATCTCCTACACAGACGACACGGGTCACTTCAGCTGGCTGCAGTTAGACAGACGTGTGCTGGAGCATGAGTTCCCCAAAAAATCCGGCCCCATCGTCCTCTACTTCTGTGtgagGTTTTATATAGAGAGTATCTCTTACCTGAAGGACAATGCCACCATCGAGCTGTTCTTCCTCAATGCTAAGTCCTGCATTTATAAGGAGCTCATAGATGTGGACAGTGAAGTCGTGTTTGAACTGGCCTCCTACATATTgcagGAGGCCAAAGGAGACTTCATAAGtaaTGATGCCACACGGGCAGACCTGAAGAAACTTCCCGCTCTGCCCACACAGGTCCTCAAAGAGCACCCGTCCCTCGCTTACtgtgaggACCGAGTGATTGAGCACTATAAGAAGCTGAGCGGCCAGTCCAGGGGCCAGGCTATCGTCAAttaTATGAGCATAGTGGAGTCACTGCCTACATATGGAGTGCATTACTACGCGGTTAAGGATAAGCAGGGGATCCCGTGGTGGTTGGGGTTGAGTTATAAAGGCATCTTTCAGTATGACTACCAAGACAAAGTGAAACCCAGGAAGGTGTTTCAATGGAGGCAGCTGGAGAATCTGTACTTCAGAGAGAAGAAGTTCTCAGTGGAAGTTCACGATCCTAGAAGGGCGTCGGTAACGCGAAGGACGTTCGGACACAGCGGCATCGCCGTGCACACCTGGTACGCCTGCCCCGCCCTCATCAAATCCATCTGGGCCATGGCCATCAGCCAGCACCAGTTCTACCTGGACCGCAAGCAgagcaagtcaAAGATCCACGCAGCACGCAGTCTAAATGAAATAGCCATTGACCTCACAGAGACGGGCACGCTGAAGACCTCTAAACTCGCCAACATGGGCAGCAAGGGCAAGATCATCAGCGGCAGCAGCGGGAGCCTTCTGTCCTCAGgcTCTCAGGAGTCAGACAGCTCTCAAACGGCTAAGAAGGACATGTTGGCGGCTCTGCGCGCTCGGCAGGAGGCTCTGGAAGAAACTCTCAGGCAGAGGATAGAGGAGCTCAAGAGCATCTGCATTAGAGAAGcggagcTGACTGGAAAGCTTCCTAAAGAATATCCTCTAGACCCAGGAGAGGAGCCGCCTACAGTACGGCGCAAAATCGGCACAGCCTTCAAACTGGACGAACAGAAGATCCTCCCCAAAGGAGAGgaggaAGAGCTGGAGCGTTTGGAGAGGGAGTTTGCTATCCAGTCTCAGATCACGGAGGCGGCACGGCGTTTAGCCAGTGATCCTCATGTGAGCAGTAAAAAGCTGAAGAAGCAGAGGAAGACATCGTACCTGAACGCACTAAAGAAGCTGCAGGATATCGAGAACGGCATCAACGAGTACCGTATCCGTTCGGGCAAGAAACCCACGCAACGAGCCTCGCTCATCATAGAGGAGGCGAATATCGGCTCAGAGGacagctctctctctgatgCTCTGGTGTTAGATGATgatgaTCCCCAGGTAGCAGGGACGCCCACCTtctctccggtttcctcccctcATAAAGGCCTTCCTCCTCGGCCTCCGTCGCATAGCagacctcctcctcctcagtctCTGGAGGGTCTCAGGCATCTGCACTACCAGCGCAGCGACTACGACAAATCTCCCATCAAACCCCGCATGTGGAGCGAGAGCTCACTCGACGAGCCCTATGAGAGGGTGAAGAAACGCTCCTCTCACTCCAGcagtcaCAGGCGGTTCCCCAGCACCGGCAGCTGTGAGACTGGAGGGAGTAACTCTTTGCAGAACAGCCCAGTGCGCACGCTGCCACATTGGAACAGCCAGTCCAGCATGCCCTCTACTCCTGACCTGAGAACCAGGAGCTACGTCCATTCAgccagCCTGTCTCAGCCTTTCCGTGGGCGGAGCTCCAGCCTGGAGTCTCAGGGGAAGTTGCTGAGCCTAGAGGCGGGACCAGAGGCGGAGCTTAGCCCAGACCTCTTCCTGTCAGGGCCACAGCGGGCAGGAAGCAGCGGCTCGGTAGTGCCAGATGACTGCTCATCATGCACCAGCCACTCGAGTTCAGAGCACTGCTGCCCACCGGTAGGCGCCAACCCCAACTACCGCACCCTAGCTGAGGACTCACCTTCTAGAGCACGCCAACGTCAGCGCCAGCGTCACAAATCCGCCGGCCACCTGGGCACCTCGAGCTCGGGCAGCATGCCCAACCTGGCCGCACGTAACGGTGGGACACCCGGAACAGCCCACCAGGGCGTCTACCTGAACAGCCAGAGCCAGCCATCATCACAGTACCGCATTAAGGAGTATCCGCTGTACCCGGCAGGCAGCAGCCCAGGCGCTGTGGTGGTCCGCAGCCTGGAGAGTGATCAGGAAGGCCACTACAGCGTCAAAGCACAGTTTAAGACGTCCAACTCATACACAGCCGGTGGCCTCTACAAGGAGGGCTGGGGGTCAGCAGGGGAGGATGGTGAGGGCGGCAGTGCCAGTGGCAGTGCCAGGCTCACACCCTCCAGGTCTCAGATAGTGAGGACTCCGTCTgtagggagggagggaggagggaacAGAGTGGCCGTGTCTGAGGAGCTAAGGTGCTGGTACCAGCGTTCGTCCGGATCGCTCAAAGAGCACTCACGTCTCACGCACACCAGTTCAAACACAGGGAGAATTGGCACACTGGCTAAGGGCTCACCAGccgcCTCTCCACACAGCCAGAGAAGTGGAACTCCATGTAGTGAGTCAGCAGCAACGCCACCCTGCAGCCCCCAGCACATCCTCAACTGGCAGAGCGGTGATACAGCTGAAAGCTCTCCTACTGAGGACCGCTCTCCCTCTCACCAAAGCACTGAGCAGTAGAGAGATCATTCAGCGACAGCTGTTTCCTGAGCAGTCCCCTGTGCTCTGAGCTCGCCGACGTGCAGTGGTATGGACACGAGAAGGCCAAGCCAGGAACTCTCGTCTAAACTTgtccctccatccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113668 lncRNA downstream 57287 7716589 ~ 7794006 (-) True G95752
TU113669 lncRNA downstream 57287 7716589 ~ 7794006 (-) False G95752
TU113383 lncRNA downstream 372186 7478872 ~ 7479107 (-) True G95482
TU113322 lncRNA downstream 420530 7387732 ~ 7430763 (-) True G95449
TU113752 lncRNA upstream 25586 7949762 ~ 7949962 (-) True G95815
TU113772 lncRNA upstream 60538 7984714 ~ 7984930 (-) True G95835
XR_004578311.1 lncRNA upstream 84951 8009127 ~ 8013279 (-) True LOC117597533
TU113790 lncRNA upstream 85388 8009564 ~ 8013412 (-) False LOC117597533
XR_004578310.1 lncRNA upstream 89979 8014155 ~ 8016621 (-) True LOC117597532
XM_026927064.2 mRNA downstream 22287 7818508 ~ 7829006 (-) True bend7
XM_026927297.2 mRNA downstream 33696 7811040 ~ 7817597 (-) False sephs1
XM_034305145.1 mRNA downstream 33704 7811040 ~ 7817589 (-) False sephs1
XM_026927298.2 mRNA downstream 36133 7810212 ~ 7815160 (-) True sephs1
XM_026927026.2 mRNA downstream 70895 7729088 ~ 7780398 (-) True mapk8ip2
XM_034305157.1 mRNA upstream 121251 8045427 ~ 8060973 (-) False prrt4
XM_026927107.2 mRNA upstream 121251 8045427 ~ 8053699 (-) False prrt4
XM_026927108.2 mRNA upstream 121251 8045427 ~ 8053699 (-) True prrt4
XM_034304934.1 mRNA upstream 163260 8087436 ~ 8113093 (-) False lepa
XM_034304933.1 mRNA upstream 163260 8087436 ~ 8094263 (-) False lepa
XR_003403522.2 other downstream 237197 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 693805 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 985954 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1657146 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 3358554 4492546 ~ 4492739 (-) True LOC117597618
TU114125 other upstream 544125 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2344301 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2344301 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 3663825 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 4387906 12312082 ~ 12314525 (-) False admb

Expression Profile