RNA id: XM_026927260.2


Basic Information

Item Value
RNA id XM_026927260.2
length 4388
RNA type mRNA
GC content 0.51
exon number 19
gene id zc3h18
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12524259 ~ 12552261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGTCGGGTTTTGATGACGTCAGAGTTATGGCTGCTCTCACGGTGCCGTGCAGGGCTTGTGCGTTTCTCCGCTAAAGAAAATTTAGAAAATCGTCAAAGATATCGTTTAGATATCGCCACTGAGGGAGAGAGACCGGGTAACTCCCAACACCGAGACCGTGTCTCCACGACGCTGTGGTTTGAAAGGTTGTGTACTGATGGACACCCCTGAGAGCCCCGCTCAGTCTCCTCAATCCCCTGATGAGGAGGAAAAAGGCTTCTCTGACAGTGAACTTCTGGAGTCGCCGGAGTCCCCTGCAGAGGAAGGCAACGGGGTTTCTGATAGCGAGTTACTGAATGACGGAGAAGGAGACGCAGACTCAGATTTTGATGAAGAGCGGGTTGAGTTGGGTGGTGGGGCTCAAGAGGACATTTCTGACTTAGAAGATGACAAAATGGATAGAGGTGGAAGGGTCCACCAGCAGGAGAGTGCCATGCTGGAATGCAGGCAGCGCATGAGCCGATCAGCTGaacaggaagaagaggaggagatcCTGGAGACACCCAGATCCCCAGACCCTGATTCCCCAGAGCCAGAGCTGGATCGGCCGTTCACCCCTGCTGATGGAGAACAGGAGGATGTCAGGCAGGAAGACGAGGATGATGGAGGAGAGGTGACCACCAGGTCCAGCTTGAGTCGCCAAGAGCTGGACgaagaggatgatgaagaggaggaaagGAGACGAAGAAGACTTATGGTAGTTAGCGATCTGAAGCAGGATTCGCCCTCCGTGTCCAGAGATTTGGACGAGCACGAGCTCGACTATGATGAAGAAGTGCCAGAGGAGCCTAGCACAGCCGCGCCAGAGGAAGAGGACACAGAGAAGGGGCCTGCCACAGAGGATGGGAATGAAGATGAGGAGGAAAAagatgaggaggagaagaagagaaagaaggagaggaacctgatctTGCCCCCTGATGCTCAGTCTAAAAAATCTGAAGACACAAGAGGCCAAGAGAGGGCTAGGAGGGATTCTTTCCGCgataaaaagaaagatgaagatgatggagaGATTGATGAAGGAGAGATTGACGATGATGATCTTGAGGAAGGTGAAGTAAAGGACCCCACAGACAGGAAAATCCGCCCCAGACCTATCTGCAGGTTCTTTATGAAAGGTAACTGCACTTGGGGCATGATCTGTAGGTTTATCCACCCAGGAGTCAATGACAAAGGCAACTACTCCCTCATCTCCAAGCCAGACCCCTTCTCTCCAAACGGAGCTCCTCCTGGAGGTGGAGGCCCTCACCCGCTCATGCCCTCCAACCCCTGGACCGGTCCTCCTGTAGAGGAGTTGCCTCCTCCTCCCCTGCCCGCGGAACCTCCAGTGGAGAGTGCTTGGGAAAGAGGTCTCCGACATGCCAAAGAGGTATTAAAGAAAGCCACAATACGCAAAGAACAGGAGCCTGACTTTGAGGAAAAACGCTTCAATGTTACCATTGGTGAAGATGAATGGGAATTTGACAAAGAAAACGACTTCTTCAGGGAACGAGGCTATCGCATTACTAGGGAAATCAGAGATCCTGGTGAAGTGGACTTCAGAGACCCAGTATATGGTGACCCATATGGTGATCCTTATTATGACTATGAAATGGAGGCTTTCTGGAGAGGTGGCCAGTATGAGAACTTCAGAGTGCAGTACACAGAGACCCCTCTGCCATACCACTACAGTgatcGGGAGAGAGATCCCCGTGAGCGgcacagagagagggagcgcGAGCGCGAGAGAGATCACCGTGAGCGAGAGCGCAGGCAGAGGGAGCGTGAGAGGGAGCGAGAACGGGAGCGTGAAAAAGAGCGGTTGCGCAGAAAGGAAGAGTGGGAGCGTGACCGACTGAAACGAGACGAGAAAGAAGGAAGACCCAGAGAACGGCCATTAAGGGAACCACgtgagaagaaagaagagaaggacAAGCCTCTTAAACCCCGTTCACCTATCAGTATGCCACCCAGAGGGCCAATGGAGTCACAGCCAAAGAAGGAGACAGTGCCCATGGTGAAACGGCCAGATGAATGGAAGGACCCCTGGCGCAGGTCAAAGTCTCCAAGGCGAAGGCCTGGCCTCATGGGGTCCCCACCCCGCGGACGCAGGCGGCATAGGCCCTCTGGCTCATCTGTGTCACTCTCTAACTCATCACGGTCATCGTCGCGGTCTTCTTCATACACAGGTTCCGGTTCCTCCCGCTCGAGGTCACGCTCACGGTCACGGTCTTCATCTCTCAGCTCTTATTCCACCCACTCCTCCCAACGTAGCTCTTTTACAGGCAGCCGTTCCAGatcGAGATCCTACTCGTCATCTCCCTCCCCTACGCCTTCCGCCCAGAGAAACACAGGCAAAAATAAAGCAGAGCCGCCTCCTGGAGCAGTGAAAGGCCACCCGCTGAAGCCTGGTACGCTGCCCCCTCCTCGCAGGGATAAGGGCCCCTCCAAGAAGATGCCCAGTCCCTCATTGCCAGGCAAACCTCTGAAACCTTTAGCGGAAGGAGTTAAACCCCCCAACCTCCGTGATGTGGGCAGACCAGCTGCACCAAGAGAACCAGCAAAACCACCCAATGTGAGGGAGGGCCGCAGGAAAGAACGGCAGCCACACGATCCTCGCAGGAGGACATTAAGTGGCAGTGTGAGTGGCAGTGGCAGCAGTTATTCAGGCTCCAGCTCTCGCTCCAGATCTCGATCCTCTTCCgcctctctttctcgctctcggTCTGGATCCCACAAGTCCAGGTCTCTGTCAGTGAGCAGCGTGTCATCAGTGTCATCTGCCTCCTCCAGCAGCAGCTCGGTGCGCAGTGCTGATTCTGATGATATGTATGCTGATCTGGCCAGCCCTGTGTCCTCAGCAAGCTCCCGTTCACCCACTCCAGGTCACACGCGCAAAGAGAGAGGACTTCCACGAGACAGGGATACCAATAAAGACAGAGGAAAACCCACAAAGAAAGATGAGACCTTTAAAGATGAAAGGAAAAGGGTTGATCAGTCTGCACCCCAGCCTAAAGCTGACTCTGGCATGCCCAGATCCGCGCCTGGAAACCGAGGGCACCCGATGAACGCGCCACCCATGGGTCCTGCAGGGGGCTATGGTTCACATAAGGACATTAAACTCACCTTACTCAACAAGCAACAAGCAGACAGAAGCAATAGAAAGAGGTACTTCCCTGCAGACAAAGACAGACCAACATCTCCTCTCAGCAAGAGAATGGCACTATCTCCTGAAAGAGGTCGAGACAGGAGGCCAGGACGTTCCCCACTCTCACCTAGAATGGACAGGCCCAGAGGTCAGGGTCCTCGGCCCATGCCTCCACAGGGAGACAGGAAGCGTCCCCAGTCCCCACCACCTAAGTCTTCTGGGAAAAACCTCACATCATCAGCTGGTAAATCTCCAGCCCCTGCACCAGGTTCAGGCTCAGGCAAACCAAGCAGCACTCTGTCCCGCCGTGAGGAGTTGCTGAAGCAGCTAAAGGCCGTGGAAGATGCCATCGCCCGCAAGAGGGCTAAAATCCCGGGGAAATGAAGAATAGGCCAGAACCCGCAACAACTGGCTTCCAAGCCATCAGACACCGAGGACACCCAGCGTTGTTTAGAAGTGGATAAAAAATGGTCATTGTGTTTAAAATCACAGACATCCAAGTAGCTCACAAAGACCACTGCTACATTATTCGCACATTTCCCCTCAGCGAGAGGTTGTCTACATTTTATATTGATGTGATATTGTAGTGGAGTGACAGTTCACTCTTAATCTGTTATTGCAAGAAGATGGAAGCTTTACTGTAGTGTCTCTATGCTGAGAAAAATGTACTATTGagttctttctctccctctgtctcgcTCTCCCTCTTATTCACTTTTTGTTAATAGTCCATGTCATGGTCATTTGATCCAAGACTAAAGATTGTGATCATCAAGAAAGGACTGCCTTACTGAGAGTGACTTCCTTTGTGCACACACCTCCTGTCGAGCTTAACTTTTGACACTCTGAAGACCTCGAGGTTCCTGTGTTCCCATCTTAACCAGTGAGCTCTCTCCAGTTCTGTATGTTTAGCATTTCCTGACTGTGTTCTGTTTCTGACTGTGTACAAATATTATAAGCCAGTTGAGGAAAAACACCTCTTAAAGTGTATGAAACTAGAGAACAAATgacagtgatgtgatgtattGCTTTTATAAGACTGCATTGGTTTTTGTCCCCTAGCTCTTCAcgtaaaaattgtattttattttgttccttATTTTTAGGTGAGTGTGAGAGTCTGTCTTTGGGACACTCTGAGATAAGGAAGAATAATATCTTGCTTTTTGTGACAGAGAAAGCTTCTAAATAAACTATTTTGATAAAGAGAATCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116665 lncRNA downstream 45982 12477903 ~ 12478277 (-) True G98383
TU116616 lncRNA downstream 248030 12275722 ~ 12276229 (-) True G98343
TU116615 lncRNA downstream 248848 12274275 ~ 12275411 (-) True G98342
TU116261 lncRNA downstream 653150 11870979 ~ 11871109 (-) False sspn
TU116205 lncRNA downstream 771061 11752525 ~ 11753198 (-) False plekhg7
TU116849 lncRNA upstream 159833 12712094 ~ 12713957 (-) True G98551
TU116867 lncRNA upstream 176183 12728444 ~ 12729493 (-) True G98555
TU116875 lncRNA upstream 186688 12738949 ~ 12742224 (-) True G98563
TU116850 lncRNA upstream 211638 12763899 ~ 12765281 (-) False G98552
TU116852 lncRNA upstream 211638 12763899 ~ 12774207 (-) True G98552
XM_026927641.2 mRNA downstream 1536 12519545 ~ 12522723 (-) True il17c
XM_026927619.2 mRNA downstream 5267 12491395 ~ 12518992 (-) True tango6
XM_026926986.2 mRNA downstream 34937 12482231 ~ 12489322 (-) True has3
XM_026927754.2 mRNA downstream 47361 12466146 ~ 12476898 (-) True tbc1d15
XM_026926946.1 mRNA downstream 61018 12458515 ~ 12463241 (-) False tph2
XM_026927151.2 mRNA upstream 55612 12607873 ~ 12680438 (-) True zfpm1
XM_026927470.2 mRNA upstream 169485 12721746 ~ 12724527 (-) True foxl1
XM_026927265.2 mRNA upstream 190092 12742353 ~ 12745627 (-) True b3gnt9
XM_034305441.1 mRNA upstream 195753 12748014 ~ 12762639 (-) False bbs2
XM_034305442.1 mRNA upstream 195753 12748014 ~ 12762613 (-) False bbs2
TU116638 other downstream 100281 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 118978 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 209734 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 913295 11588001 ~ 11610964 (-) False arntl2
XR_003403495.2 other downstream 2229436 10268477 ~ 10294823 (-) False ttc38
TU117111 other upstream 493562 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 884640 13436901 ~ 13436975 (-) True LOC113534846
XR_003403499.2 other upstream 998419 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 1093148 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 1212665 13764926 ~ 13765056 (-) True LOC113534845

Expression Profile