RNA id: XM_026927265.2


Basic Information

Item Value
RNA id XM_026927265.2
length 2282
RNA type mRNA
GC content 0.43
exon number 2
gene id b3gnt9
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 12742353 ~ 12745627 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGGGACAGCGCGATGCAAGAAGCGTCGAGGCtcttctgattttatttattttatttatttttgtatcgAACAAGTATTTTAATACGCACCCTGATGTTAGGAATTGCTCTTGTTGAGTTTTAATCTGTCTTTGGTGAGAAAGCAATACTTGgAACTGCCTTTGACATGGGACATGAcaatgtgtgttaaaaaaattaacatttaataccGACTGTCTTTGACTGGCATACTCAGAATTGACGGTTGTAGTTTCTCAGATTATTTTCCTTATAACACAGAGAAAAGCCTTCCCAGTTGGAAAAAATCAAGCTCACACTCAAGGAGGGGATAAATCGTGCTCCAAATGGAGTCTGGTTGCATTGGAATCATTGGCAATGAGGAAATTGTGACAGTATGATGAATCTGCAGATTCCATGCTTAGTGAGCAAGCTAAAAAACGAGGCTCGTTAAACCCTGGGTTTGAGTGTTTGACACAATGAGGAGAATCCGCATGAAGGGAGATGTCCTCTGCACCCTCATCTTGCTGGTACTAATCTGTATACTGTGGTATGCCCATCAGAGTTTAACACCTATCTGGGAGACGGTGCGTATCGAACATGGCTCTAGCAGCTCTCGAGCACTTCTTGGAGCACCAACAAAAGGAATCTCGTTACCCTCTCAAACGTCTAATTTACTTCATTGTGATCATGAGCCTACACTCCAGACTCAAACCAAATCTAAACCACAGACTAAATTAAAAGCTCCAAAAAGCCAAGttaaatcaaagaaaaaagatggaagGAAAAAGCCTACAGCAAAAACCATTACTGTACCCACGCTTCCTCAGTTTGACTTTGAGGATTACCTTCTCAAGAAGGACCAGCGGGAGTTCAAGATGCTCATTGACCAGCCAGAGAAATGTAAAGGACCTAAAGGTGCACCGTATTTGCTGATTGCCATAAAATCAGTAGCTGTAGACTTTGACAAGCGACAGGTTGTGCGACACACCTGGGGCAGCGAAGGTGTAGTCCAGAACGGAATGAACATCATGACCGTTTTTCTTCTTGGAGTACCCCAGAATGTTACGGCGCTTCCCTTGTGGGACAAGTTGTTGGCGTACGAGAGCCACATGTTCAAGGACATTCTGCTCTGGGACTTTGAGGACACGTTCTTTAATCTGACACTTAAAGAAACTCACTTCCTCCAGTGGGTCAACTCAAGCTGTTCAAATGTGAAGTTCATTTTCAAGGGTGATGCGGATGTCTTTGTGAACGTTGAGAACATTCTGGAAATGCTTGGCAgtagacaggctggtgaggatCTTTTTGTCGGAGACATCATCTTCCATGCAAAACCAATTCGCAGACGTAACAGTAAATATTTTGTGCCTGAATTTATATATGGCCAGGGGATCTATCCTTCATATGCAGGAGGTGGAGGTTTTGTCATGTCAGGCCACACTGCACTTAGGCTGCATGTGGCCTGCAAGGAAGTGGAACTCTTCCCCATAGATGACGTTTTCCTGGGAATGTGTCTGCTCAGGATCGGTCTCAAGCCAAGCCGTCATGAAGGCTTCCGTACCTTTGGAATTGTGCGTCCATCGGCGGCGCCACACCTGCAGGTGTTTGACCCATGTTTCTACAGAGAGTTGATGGTGGTGCACAGCCTGAACGTGCCACAGATCTGGCTTATGTGGAACCTCCTACATGACCCCAGCGTACGCTGTCATACTAATCAAGCTCATACGGCGGAACCCTTTAAGTGGATAAAAAACGCACCTGAACAGGCTAAACCCGAGGATCCTGGTAAAGCTGACTATGACATGCAAGTGTTTGTGAAGCACTGAGAAGTGTACACTGTGAAATGTAGATAAAGACTGAAGACTTGAATGTAAAAGGTTTGTTATTGACAGTTTCAGCCTGGAGATAATatatctaaacacacactgtttgtgATTGAGCATGAATCACAATGTCCCAGTGTTTGAAAAGTAATTTTTTCCATGGCTACTGATGGCACTGTTATAATCTATAAAAGCAAACTGTGGAGGCCAAGGACATTGTGAATAATATTTTCTAGGGACAGTAAAACCCAGGGGAACAAATTCCACTGGCTAATCATAATGACAGGAATGTGGAATACTGTAGATACTCAAATTGTACGACTTATCACAATTACTCTAACTAAGCATGGTTCTAGACTTCACATCGTTTTAGCTTTTACAGTTAACTTTGTTGGGACCATCTGCTGGTTTTTGTTTGGTAAGAGCTAGTTGGCATTAAATAAAGTTACTAAAGTTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K18705 B3GNT9; beta-1,3-N-acetylglucosaminyltransferase 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116875 lncRNA downstream 129 12738949 ~ 12742224 (-) True G98563
TU116867 lncRNA downstream 12860 12728444 ~ 12729493 (-) True G98555
TU116849 lncRNA downstream 28396 12712094 ~ 12713957 (-) True G98551
TU116665 lncRNA downstream 264076 12477903 ~ 12478277 (-) True G98383
TU116616 lncRNA downstream 466124 12275722 ~ 12276229 (-) True G98343
TU116850 lncRNA upstream 18272 12763899 ~ 12765281 (-) False G98552
TU116852 lncRNA upstream 18272 12763899 ~ 12774207 (-) True G98552
TU116862 lncRNA upstream 27511 12773138 ~ 12774207 (-) False G98552
TU116902 lncRNA upstream 57171 12802798 ~ 12803608 (-) True G98588
TU116922 lncRNA upstream 92593 12838220 ~ 12838542 (-) True G98607
XM_026927470.2 mRNA downstream 17826 12721746 ~ 12724527 (-) True foxl1
XM_026927151.2 mRNA downstream 61915 12607873 ~ 12680438 (-) True zfpm1
XM_026927260.2 mRNA downstream 190092 12524259 ~ 12552261 (-) False zc3h18
XM_034305441.1 mRNA upstream 2387 12748014 ~ 12762639 (-) False bbs2
XM_034305442.1 mRNA upstream 2387 12748014 ~ 12762613 (-) False bbs2
XM_026927623.2 mRNA upstream 2387 12748014 ~ 12762500 (-) True bbs2
XM_026927457.2 mRNA upstream 158406 12904033 ~ 12914246 (-) False psme3ip1
XM_026927455.2 mRNA upstream 158406 12904033 ~ 12914245 (-) True psme3ip1
TU116638 other downstream 318375 12421102 ~ 12423978 (-) True akip1
XR_003403510.2 other downstream 337072 12397687 ~ 12405281 (-) False znf143b
TU116624 other downstream 427828 12312082 ~ 12314525 (-) False admb
XR_004578339.1 other downstream 1131389 11588001 ~ 11610964 (-) False arntl2
XR_003403495.2 other downstream 2447530 10268477 ~ 10294823 (-) False ttc38
TU117111 other upstream 300196 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 691274 13436901 ~ 13436975 (-) True LOC113534846
XR_003403499.2 other upstream 805053 13550680 ~ 13562574 (-) True c6h15orf39
trnaq-cug_10 other upstream 899782 13645409 ~ 13645480 (-) True trnaq-cug_10
XR_003403538.1 other upstream 1019299 13764926 ~ 13765056 (-) True LOC113534845

Expression Profile