RNA id: XM_026927298.2


Basic Information

Item Value
RNA id XM_026927298.2
length 2007
RNA type mRNA
GC content 0.47
exon number 8
gene id sephs1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7810212 ~ 7817597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCAGTGCGGGAGGCTTTTAACCCAGAGAGTTACGAGTTGGACAAGAACTTCAGACTAACACGATTCACAGAGCTTAAAGGCACCGGCTGCAAAGTCCCTCAGGATGTGCTTCAGAAACTTCTGGAGTCCTTGCAGGAGAACCATTATCAGGAGGATGAGCAGTTCCTCGGGGCAGTTATGCCCAGACTGGGCATCGGTATGGACACCTGTGTGATTCCTCTGAGACACGGTGGCCTTTCACTAGTACAGACCACAGACTACATCTACCCTATAGTGGACGACCCTTACATGATGGGCAGAATTGCGTGTGCTAATGTCTTGAGTGACCTGTACGCTATGGGAGTGACCGAGTGTGATAACATGTTGATGTTGTTGGGCGTTAGTAACAAACTATCAGAAAAGgagaGGGACAAGGTGATGCCACTTATTATCCAGGGTTTTAAGGATGCAGCAGAGGAGGCGGGCACCTCGGTTACAGGTGGACAGACAGTTGTGAACCCCTGGATCGTACTTGGAGGCGTGGCCACGACAGTCTGCCAACCTAACGAGTTCATCATGCCAGACAATGCAGTGCCAGGTGACGTGTTGGTTCTCACCAAACCTCTCGGCACTCAAGTAGCAGTCGCAGTGCATCAGTGGCTGGACATTccAGAGAAATGGAACAAAATCAAGTTAGTAGTGACACAAGAGGATGTGGAGCTAGCCTATCAAGAGGCTATGCTGAACATGGCCAGACTCAACAGAACAGCGGCAGGTCTGATGCACACATTCAACGCACACGCTGCCACTGACATCACAGGTTTTGGTATTTTGGGTCACGCTCAGAACCTCGCCAGGCAGCAGCGCAGTGAGGTCTCCTTCGTCATCCACAACCTACCCGTCCTCGCCAAGATGGCCGCCGTCAGCAAAGCCTGCGGGAACATGTTCGGCCTAATGCACGGCACCTGCCCTGAGACCTCAGGAGGCCTGCTGATCTGTCTTCCACGTGAGCAAGCTGCTCGCTTCTGCGCCGAGATCAAATCCCCGAAATATGGCGAGGGCCACCAGGCCTGGATCATCGGCATCGTAGAGAAAGGCAACCGCACAGCTCGCATCATCGACAAACCCCGCATCATCGAGGTTGCACCCCAGGTGGCCACGCAGAACGTCAACACCACCCCAGGAACTACATCCTAAAGCTGAGCCTACGACTCCTGAACATTTAGCACGCTCTAGCACCACCACAGCGTAgaaacacacaccacctgcCTACCATGACCTTACGGCAGATACTACATGGACACAACTAAgagtttaaaaaagtaacagGGAATTAAAGtccattgcttttttttgtgtcgATATGTTTTCTGTTACAAAATGTTGCAGAAGCACCCAACTTTAAGGCAGCTTCTACAGTAAATGAAGAGTATGATGATAATCTGATACTGTTGATTCATTATGAATCTCTTCTGCTCCTCTTCAATTGGAAATTATGCCCCAGTCCATCCCTATTGACCCACCGACATGCGTACATTGTAGCAATATATATTGTTTTGCTTTTGACGCTCCATGTGCTAGCAGTAGTTCAGACTGTAGCCAATATGTTGAGCGATAGAAAAAGTGAgtatatacatgtttttttttctacttccaCTTTTGTATGATATGTCTTTGGACTAATCAAAATAAAGTGACCCTTGCCTGGTTTTGAATGGGCTGAAAGAATCAGAAGTAATTAAACACCGTCCCCTATCTTTCAAGGTGTACCATGTCTAGCCATAATGGCAGTGTGTTGACATTTTGTCAGCGAATGTAAACCGTGGAGATGCAGTTTATATATTGTAGGACATTCACTGTCTCATACAGAAGTCATTAAATTCTTCTGTGATAGAGTTGAGTTTTTATATTCCCCTACGAAAACCccattattctctctctctctctctctctctctctctctctcacagaatCACCAACAGTGATATCTTTATGCCCCCTGAATaaatctgatcttttttttaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0004756 selenide, water dikinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K01008 selD, SEPHS; selenide, water dikinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113668 lncRNA downstream 16206 7716589 ~ 7794006 (-) True G95752
TU113669 lncRNA downstream 16206 7716589 ~ 7794006 (-) False G95752
TU113383 lncRNA downstream 331105 7478872 ~ 7479107 (-) True G95482
TU113322 lncRNA downstream 379449 7387732 ~ 7430763 (-) True G95449
TU113344 lncRNA downstream 388361 7420628 ~ 7421851 (-) True G95460
TU113700 lncRNA upstream 5230 7820390 ~ 7859029 (-) True G95773
TU113718 lncRNA upstream 46362 7861522 ~ 7861806 (-) True G95783
TU113720 lncRNA upstream 57573 7872733 ~ 7873314 (-) True G95785
TU113752 lncRNA upstream 134602 7949762 ~ 7949962 (-) True G95815
TU113772 lncRNA upstream 169554 7984714 ~ 7984930 (-) True G95835
XM_026927027.2 mRNA downstream 29814 7729088 ~ 7780398 (-) False mapk8ip2
XM_026927026.2 mRNA downstream 29814 7729088 ~ 7780398 (-) True mapk8ip2
XM_034305464.1 mRNA downstream 115785 7438091 ~ 7694427 (-) False shank3a
XM_034305465.1 mRNA downstream 116200 7438091 ~ 7694012 (-) False shank3a
XM_026927732.2 mRNA downstream 196115 7442310 ~ 7614097 (-) False shank3a
XM_026927064.2 mRNA upstream 3348 7818508 ~ 7829006 (-) True bend7
XM_026927257.2 mRNA upstream 32675 7847835 ~ 7976917 (-) False frmd4a
XM_026927256.2 mRNA upstream 32675 7847835 ~ 7950448 (-) False frmd4a
XM_026927253.2 mRNA upstream 32675 7847835 ~ 7940808 (-) False frmd4a
XM_026927252.2 mRNA upstream 32675 7847835 ~ 7940807 (-) False frmd4a
XR_003403522.2 other downstream 196116 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 652724 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 944873 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1616065 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 3317473 4492546 ~ 4492739 (-) True LOC117597618
TU114125 other upstream 653141 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2453317 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2453317 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 3772841 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 4496922 12312082 ~ 12314525 (-) False admb

Expression Profile