RNA id: XM_034305156.1


Basic Information

Item Value
RNA id XM_034305156.1
length 3355
RNA type mRNA
GC content 0.47
exon number 12
gene id slc6a15
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11905608 ~ 11926257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggtacaaaagatgtatcCTTAATGGTAACACCtaagtgacaaggaaagCCTGCCACGTAACAATGAGGCCATAAATATCACCTCGCTCCGTGACATCTCATTAATATTCCATTTGAAGCACGTGACTTTAAAGAAGAGATTTAAGGTTGTTCAGGCATACTCCCTGCCCTTCATCCCAAACCAAAAAAGACATTTCTCCCCTTAGGAACGATTGACTTATCAAATGCCCAAAAACAGCAGATCCGTCAAGAGAGAGCTTGACGATGATGTCACTGAGTCTGCTAAAGATCTGCTTTCCAACGAGGATGCATGTGACGAGCCGTTTCAGAAGAGCACAGTGAGCGTGCGAAACACAGCCGGCTGTGAGGAGCGGCACGTGGAGGAAGGCTCTGATGATCCcgaagaggaggaagatgaaggcGAGGAGAGGCCCGCATGGAGCAGCAAACTCCAGTACATCCTCGCACAAGTGGGTTTCTCAGTGGGCCTTGGCAACGTCTGGAGATTCCCATACATGTGCCAGAAAAACGGAGGTGGAGCCTACCTGGTGCCCTACCTCATCCTGCTTATGGTGATTGGGGTCCCACTGTTCTTCCTGGAGCTGGCTGTGGGCCAGCGCATCCGCCGTGGCAGCATCGGCGTCTGGAACTACATCAGCCCTCGACTGGGTGGCATTGGCTTTGCCAGCTGTGTGGTGTGCTTCTTTGTGGCCCTTTATTACAATGTCATCATCGGGTGGAGCCTGTTCTACTTCTCTCAGTCATTTCAGGAGCCTCTGCCCTGGCACGAGTGTCCTCTAGTCAAAAACAAGACCACCACATATGTGTTGCCTGAGTGCGAGAAGAGCTCGGCTACTACCTATTACTGGTACCGTGAGGCTCTGGATATTTCTGACTCCATCTCAGAGAGCGGAGGACTCAACTGGAAGATGACGTTGTGCCTGCTGTCTGCGTGGTCCATGGTGTGTCTGGCCATGATCAAAGGCATTCAGTCCTCAGGGAAGgtGATGTACTTCAGCTCCCTCTTCCCCTATGTGGTGCTAATCTGTTTCCTGGTGAGATCCCTCCTACTGAAAGGTTCTGTGGACGGCATCATCCACATGTTCACCCCCAAGTTGGAGATCATGCTGGAGGCTCAAGTGTGGCGTGAAGCTGCTACACAAGTGTTCTTCGCTCTCGGCCTGGGTTTCGGTGGCGTCATTGCCTTCTCCAGTTACAACAAGCGCAACAACAACTGCCACTTTGATGCCGTTCTCGTCTCCTTCATCAACTTCTTCACGTCTGTGCTGGCCACGCTGGTGGTGTTCGCCGTCCTCGGCTTTAAAGCCAACATCATGAATGCCAAGTGTGTCGAACTaaacacaaaaaagattGTTGGATACCTTGGCAACGaggtaagtgctaacttaatTCCGCATCACATCAACTTAAGTCGTGTGAGCACAGAAGACTACCAGCAGATGACCAGCATCATCCGTGGAGTGATGGAGGACGATTACCCTCGCCTGGGCCTCGACAGCTGTGATATAAAAGAGGAACTCAACAAGgCAGTACAGGGCACAGGCCTCGCCTTCATCGCCTTCACTGAGGCCATGACCCACTTCCCTGCCTCTCCTTTCTGGTCAGTCATGTTCTTCCTAATGTTGGTGAACTTGGGGCTGGGCAGCATGTTTGGCACAATCGAGGGTATCATCACACCCCTCGTGGACACTTTTAAAGTGCGCAAGGAATACCTGACAGTTGGCTGCTGCTTGCTGGCATTCAGTATTGGTCTAATCTTCGTCCAGCGATCAGGCAACTACTTTGTGGCCATGTTTGATGACTACTCTGCTACGCTGCCCCTCCTCATCGTAGTCGTTCTGGAAAACATGGCTGTAGCCTGGGTCTACGGCACAGAAAAGTTTTTCGAGGATCTGAAGGACATGTTGGGTTTCACTCCGTTCCGATATTATTACTACATGTGGAAGTATGTTACTCCTCTGCTGCTGCTTGCACTGCTGACTGCTAGCGCCATTCAGCTGGGCATGAGTCCTCCCAGCTACAGAGCTTGGAACCAGGAGCTGgctcAGGACCAATCACTCAGTTATCCTCCATGGGGCCTGGCTGTCTGCATCACGCTAGTGATTGCTGCTATTTTGCCTGTCCCTGTTGTGTTGATGTTGCGATATTTCAACTTGATTGACGAGAATGCCGGCGGCGTGTCCTCCATCTCCTATAAGAAGGGCCGAATCATTAAAGAGAGTGTTCACAGAACGAGGCAAGAGGAAGAGGGAGATGACACCAGTCTCCTCCAGGGAAAAACACCAAGTGAGGCTCCTTCTCCCATGCCGCCTAATAGTATGTACCGCAAGCAGAGTAGCTCCACGGCTCAGGCAGATCCCACCTCCAATGGCCACTTCAGCATCGGCTATCTCATGGCCGACATGCCAGATATGCCCGAGTCCGACTTATAAAGGCAAGTCATGTTATGTTTCCCTCAGAGCTCAAGTTCAGGGCGTACATGTGAACATAAATCAGTTCATTTGCCATTCCACAGCATCTGTGCATCAAGTTAACATTCCATCTCACCTGTATAACCACATAGATCTTCAGTCCCACTCTTCAGTTTAACTCCCCTCCCCACCTCATTATGTAGTCATGAAAAACAGTATTGTAGACACACCTGTAGCCCTAAACATTGCCCAGGTTTTGCGCACTCCATTTCTTTTCCTGTCTCCTCTCTGATCACAGGAGATGTTTTACCTCTGGGTTTCATTCTGTAAATACTGATCATGTCTCAGAGTAAGGACAGTCACTGTCCATCACTAACAAGATTAGAAACAGCTAGTAGCTTCAGAAGCATTTAGAATGTACTGTAAGCatcaaatgtgaaataaaacatgcaatattacatttatttgatcAAATTATGGCTATAATGTGCACCGTATGAATGACATGTACAACCTAAAATGATTGTTCAAATAATGTGTGcctaataatttgtttatacaATGCGGCTGTTGTAAATTTAAGGtattctgtaaatatatattatatttatctgATGATAGTTTGGatatcaaaatgtttttggtaaaaaaaatgctcaaagCCCTAAACGCTATCtctttatgtttatgtaatagCACTCAATGGCTATTTGACAGTctattaactgtaaatataaaattccTTGAAAATGCTTTGACctctttttttcagcattacaattaaaaataacaagaaaaacatctaaGCAAGTTACTGTTTCATTTGTccacacattttattgtttaaccaAACTGTTTATTGGAAGAAAGtataaattacagtaatatCCAGGGTAATTATGTGACACTTAGGTCACAATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116261 lncRNA downstream 34499 11870979 ~ 11871109 (-) False sspn
TU116205 lncRNA downstream 152410 11752525 ~ 11753198 (-) False plekhg7
TU116158 lncRNA downstream 208943 11680729 ~ 11696665 (-) True G97932
TU116615 lncRNA upstream 349960 12274275 ~ 12275411 (-) True G98342
TU116616 lncRNA upstream 351407 12275722 ~ 12276229 (-) True G98343
TU116665 lncRNA upstream 553588 12477903 ~ 12478277 (-) True G98383
TU116849 lncRNA upstream 787779 12712094 ~ 12713957 (-) True G98551
TU116867 lncRNA upstream 804129 12728444 ~ 12729493 (-) True G98555
XM_026927130.2 mRNA downstream 27404 11870908 ~ 11878204 (-) True sspn
XM_034305447.1 mRNA downstream 135622 11754521 ~ 11769986 (-) False plekhg7
XM_034305444.1 mRNA downstream 135624 11753102 ~ 11769984 (-) False plekhg7
XM_026927316.2 mRNA upstream 111659 12035974 ~ 12047751 (-) True rassf9
XM_026927317.2 mRNA upstream 111659 12035974 ~ 12047739 (-) False rassf9
XM_026927314.2 mRNA upstream 142715 12067030 ~ 12191361 (-) False mgat4c
XM_026927311.2 mRNA upstream 142715 12067030 ~ 12191361 (-) False mgat4c
XM_034304975.1 mRNA upstream 142715 12067030 ~ 12191361 (-) False mgat4c
XR_004578339.1 other downstream 294644 11588001 ~ 11610964 (-) False arntl2
XR_004578315.1 other downstream 1610785 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1610785 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3427372 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 4291512 7442373 ~ 7614096 (-) False shank3a
TU116624 other upstream 387767 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 473372 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 496787 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1121508 13045823 ~ 13052311 (-) True G98770
XR_003403539.1 other upstream 1512586 13436901 ~ 13436975 (-) True LOC113534846

Expression Profile