RNA id: XM_026927330.2


Basic Information

Item Value
RNA id XM_026927330.2
length 2598
RNA type mRNA
GC content 0.59
exon number 6
gene id tiparp
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3367401 ~ 3398528 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccactgagctcgcgagagcgagagagagagagagagagagagggggagcgCGCGCACTGTCGGTACAGCACTCCGTGATAGATGTGCGTTTCGTCCCCGAGAACAAGACAAGggggaagaaaaggaaagagcgTTCGGTCCATGCGTGAGCGCTCTCGTCACGCGCTGTCCTCTTCTCCTCCTTGTCGCGCGGAGATTCGCGGACACGTCGCTGACACGCTCATGCTCGAACGGGAGAGCGACTTGAGCGGACGGCGCCGTGGGAGAAACCGGAGGACCGCAGGCTATTCACAGaatcCATGGAGAAAAGTTTAGGAATGATGCCGGAAGCGGAAGAGAGTGGAGCTAAAGTGTTGGGAAGCCTGGCCATGGGCGACGGGGAGTTCTCGGATCGCCGGCTCGGGCTCGTGGACAAAATCCCGTTGGTGAAACCCTATTTCAAGAAGAAGCACGCGCAGAGGAAACTGGACGCCAAGTGCCTGCGGGCGCTCGATGACCCCATTCTGAGCACGATACTGAGCTCGGACGACCTGGTGACCGGAGATGGCGTTTTCGTGCCGCGGAATCCGCCGCCGGCGTCCGCGCAGCCGAGCCTGATGTGCGCCGCGGCCGTGGCGGAGGAGGCGCGCGCCGACGCGACGGCGGAGGAGCTCGCGGCAGGCGAGCAAAAAGCGACCGGCGCGACGAGAGACTCCAGCGAGGCGTCTTCGCGCGACGCTGCGACGGCGGCTCGGTCCTCCTCGGTCCTCGAGGCGGCGGAGAAGGCGGctgcggcggcggcggcggtgGCGGTGAACGGCGTTGAGTCGTCCGCCGTCGTGCTCGGCGGTCACGGAGAACTTTTCCGCGACAAGAGCGACGAGGCCTCTTTGGATCTAGTGTTCGAGCTGCTCATGCAGCTGCAGTATCACACGCGCCAGGACGACGGCGTGCACATCTGCGTGGATTTCTTGCGCGGCGCGTGCCTGTGTGGCAGTGAGTGCGCGCGGCACCACACCGCGCTGCCCTACCACTGGCAGATCCGGCGCGCGGACACGCGCGTGTGGCAGAGTGTAGCCGAGGACGCGCAGGAGCAGCTGGAGAGACTCTACTGCAACCCGGACAATGAACAAGTCCGGCTTAAATTCCTGGGTCGAGTGTTTATGCTGGACTTCAGTGCcatgagagtgtgtgatatgGAGTTTGACCTCGTCAGACGGTTGTCCACGCCCTCCAGTTTTGGAGCCATGCCCCCCAGCACAAGCCCCGCCTCCAACACAAACCCCGCCCCCAGCTATCTCACAGTGTGGAAATATTACTGCAGAGATAACTTCGGCTGGAGGGAGTACTCAGAGCCTGTGGTGCGTTTGATAGAGGAAGCGACTGAGCGGGGGCTGAAGGAGGTGCGCTTCATCACACTCCAGAACCAGTACATCCTGAATATCCGCGAGGGCTTCCAGCAGAACGCCGTCTTCGGTTTCCGCCGCCAGATCAAAAAACGACCACACTTCATGTCCTCCATTAGACTCTCACCCTACCTGCAGACTCTTGGAGGTCTCTGTGCTCTTGAAGTCGTCGGGCCGCAGCCTCTCTCACCCACATCCTCCTCAGGACCCCGGCTTTTCCCCGAGACGTGGGTTCCCATGAACCCTGACCAGGACTTTATGCAGGTGCCGGTGTCACGTGAGGACCGCAGCTACCGCACCGTCTACAACCTCTTCCACAAAACAGTGTCCGAGACCAAATTCCGCATCCTGAAGATCCTCCGCGTCCAGAATCCGTTTCTCTGGGAGAAATATAAGAGGAAGAAGGAGTACATGTCGCGGCGCATGTCGGAGGCGGAGCGCCTGCTGAACGAGCGCCACCTGTTCCACGGCACCTCGCAGGACGTGGTGGAGGGCATCTGCAAGCACAACTTCGACCCCCGCGTGTGCGGAAAGCACGCCACCATGTTCGGCCAGGGTAGCTACTTCGCACGTCGGGCGGCGTATTCGCACAGCTTTGCACGCCGCTCGCCGCGCGGCCTGCACTACATGTTCCTAGCCAAAGTGCTGACGGGAAAGTTCACGGTGGGAAACCCGGGCATGCGGCGGCCGCCCCCGCTGTGTCCTCGCCAGCCCGCCGGAGACCTCTTCGACTCGTGCGTGGACAACTGTGTAGACCCGCAGATCTTCGTCATCTTCAATGACGACCAGAGCTATCCGTATTTTATAATCCAGTACGAGGAGGTGGCCAACACCGTCGCCATCTGAGCGAACGTTGTGTGCTTGGGAGGACCgttattcttgtttttgttggaAGTCATGGACGGTACGGACCGCTTAGTCGGCAGCGTGTGCATGTTTGAGGAACTGACTTCCAGGCTTCCATCCTGCAGCGTCGTGTGTCCGTACACGAGTCTGACCCCACTTTCGGTCGCTCGGACTTGACGCCGTCATCGAagcattgacttttttttttggaaagactCATGCCCCTCCCTCATCGCTGCCATCCATTTTCCGTACTTAATTTGTTGTACATATGCTTTTCTTGTTTATAATTGAACTGTGTGCCTTTTGttcataaaaaattatttatgttaGTTAATGTAACAAATAAAGAGTGAAAGTGAAGGTG

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0046872 metal ion binding molecular_function
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111001 lncRNA downstream 206 3366721 ~ 3367195 (-) True G93380
TU110952 lncRNA downstream 131749 3227269 ~ 3235652 (-) True G93339
TU110953 lncRNA downstream 131749 3230950 ~ 3235652 (-) False G93339
TU110967 lncRNA downstream 151936 3215259 ~ 3215465 (-) True G93353
TU110964 lncRNA downstream 155278 3211868 ~ 3212123 (-) True G93350
XR_004578300.1 lncRNA upstream 7617 3406145 ~ 3422158 (-) True LOC117597513
TU111130 lncRNA upstream 26495 3425023 ~ 3454371 (-) True G93505
TU111190 lncRNA upstream 180489 3579017 ~ 3581206 (-) True G93557
TU111281 lncRNA upstream 336569 3735097 ~ 3735392 (-) True G93639
XR_004578346.1 lncRNA upstream 546459 3944987 ~ 3946376 (-) False LOC113534402
XM_034305331.1 mRNA downstream 76165 3243210 ~ 3291236 (-) True lekr1
XM_026927191.2 mRNA downstream 238012 3123317 ~ 3129389 (-) True ptx3a
XM_026926991.2 mRNA downstream 299100 3064670 ~ 3068301 (-) True LOC113534302
XM_026927419.2 mRNA downstream 305906 3056704 ~ 3061495 (-) True LOC113534536
XM_026927431.2 mRNA downstream 314206 3048260 ~ 3053195 (-) True LOC113534544
XM_034305556.1 mRNA upstream 27190 3425718 ~ 3548751 (-) False kcnab1a
XM_034305553.1 mRNA upstream 27190 3425718 ~ 3531691 (-) False kcnab1a
XM_034305554.1 mRNA upstream 27190 3425718 ~ 3510571 (-) True kcnab1a
XM_026927744.2 mRNA upstream 151553 3550081 ~ 3559163 (-) True LOC113534786
XM_034305180.1 mRNA upstream 163798 3562326 ~ 3584100 (-) True gmps
TU110621 other downstream 599103 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 616232 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 1598606 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 1719115 1628629 ~ 1648286 (-) False sema6dl
TU109967 other downstream 1723184 1627801 ~ 1644217 (-) False sema6dl
XR_004578380.1 other upstream 30500 3429028 ~ 3531691 (-) False kcnab1a
TU111361 other upstream 774760 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 1094018 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2795547 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 3466740 6865268 ~ 6865339 (-) True trnap-agg

Expression Profile