RNA id: XM_026927337.2


Basic Information

Item Value
RNA id XM_026927337.2
length 2381
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC113534489
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4928340 ~ 4930720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cactgaCGATCACTTcctcagtcagagagagagagagagagagagactgctggCACATTTAGGTCCAGAGTAAAGGCTGATCATGACAGGTTTCTGATGCTCGGCCCGGATCACCGCACACACGGCACCGCCCGGATCCGACGGTTAAGCCTGCGGTAATCGCGGGAAGGAAGGACGGACGGACGGCGTTAAAAGGGGGGGAAGAAAAAGACCCAGCAGGGGTGGAGGAGTTAAGgcgacagagaaagagagagtgagagcgagaaGACCATGCGAGAATACAAAGTGGTCGTGCTCGGCTCCGGCGGCGTGGGCAAATCCGCCCTGACCGTCCAGTTCGTCACGGGCTCCTTCATCGAGAAGTACGACCCCACGATAGAGGACTTCTACCGCAAGGAGATCGAGGTGGACTCGTCGCCGTCGGTGCTCGAGATCCTGGACACGGCCGGCACGGAGCAGTTCGCCTCCATGCGCGACCTGTACATCAAGAACGGCCAGGGCTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAGGACATCAAGCCCATGAGAGACCAGATCATCCGGGTCAAGCGCTACGAGCGGGTTCCCATGATCCTCGTGGGCAACAAGGTGGATCTGGAGGGCGAGCGGGAGGTGTCCTCGGGAGAGGGCAAGGCGCTGGCTGATGAGTGGAACTGCCCCTTCATGGAGACCTCGGCCAAAAATAAAGGCTCAGTGGACGAGCTGTTCGCCGAGATCGTGCGCCAGATGAACTACGCCGCGACGCCCAACGGGGACGAGCAGTGCTGCTCCTCCTGTGTCATCCTCTAAAACTAACCGCTCGGAGCTGTTGTCTttggttgttgctgttgtttttttgtttttgttttgtttgttttgttttgttttgttctgttccCCTCACTTTTGCAGTCGCGAGCCGTGTGAGCGCGCGACTTGGTAAATAATGTGACTCCTTCGAGCCAGAGCCAGATGACTCCCTGAGACTCCATTAAGAACGACAAGtttcagcaaaaacaaacaaaaaaacagagccAATTtagctctctgtctctcgaTCTCTCTAAAGAATCCCTTTCTGGTGTTAAATGtcatcagtattttttaaaaaagtgtcctATATTGTCTTGCACATGCgtgatacagaaagagagagagagagagaagggaaagtGCATCAGTGTTTACAATGACAGAATACTTGAATGTTCTGGGATTGACACAAACCAACCCAgggttgtttttcttttcttttttttttgttttttaaacgtCGTCTCCCTGGTGCCTAGCTTATGTGGCTTATTCTTTTGATTTTAGCCCCCAGACTGATTGGTAAAACTTTTTTTGGGTTGTTGCTTTGGCAAGATTTAGTAACTGTGTCCCAGCCTTGGCCTGCTTTTGCAGTATCACTTCCGGTTTTTGGAGATGCGGATCCCACTTATTGCTAACTAGTAGCATCTGGTAACTATGGAAACTAAACGACGACTTCGAGCCGGAAGTAGtttatgaggattttttttttcttttaaaatgtgatgtCCGGGTTCTCGCGAggataataatgaataaatacgAACTTCACTTTAGGATCAACTTTAGGAAGCCAAATGGCGTAATGGAGGATTAAGTTTTGCTGCACGCGACGACTCGAAGGatctgcaaaaaacaaaaacaaacaaacaaaaaaagacctTGGGATTCTTTTcgtgttgtattttatttaaaaaaaagaaaaaaaagtaaagaagagTCGACGGAAGTTGTCACATTTCCGAAACCACGTCACAGCgacttttgttgttgtttttttttttctttaactcaGCGTGCGCGAGGACCTTACTGTGGTGACGTAAGGACGTCGTGATGACGCCGTGCGTCGAGTGCCTTCCATTTTTAGTGCCAACCTGAGAAGGTCTGAGGAAGTTTTATGGCAAAGTACTTAAACTGTTACacttaagaaaaaagaaaaaaaaagggggggttATAGAGTGTTCATAACGCCTCTTGTCAAAGGAATCACGTTCTTTTGGCTCACAATTTGGCCTTTAGTCAtgtttcattattgtttttattttgtatttagttCCCTTTTCTTCAaggctggtctgtttttggccaAATAGGCTTTAAAAAAGACAGGTACTGGAGCTCTTTCAGCTCTCTGGCTCACAACCATAACCCACTTCCTCGAGaccagtgttttgtttttggttcattctttaatttttattttttaacaaaaaaaatgtgatgtatcATTTGAAATTCTAATCCGATTGTACGTTTAAAAGCAGACCGGCTTTTTAACAGCTGTTCTGAATGtttaaaaagacttttaatacaaattgcatttttaaaaaata

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07838 RAP2B; Ras-related protein Rap-2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111595 lncRNA downstream 34266 4893586 ~ 4894074 (-) True G93926
TU111561 lncRNA downstream 143209 4783925 ~ 4785131 (-) True G93896
TU111413 lncRNA downstream 381635 4546439 ~ 4546705 (-) True G93753
XR_004578376.1 lncRNA downstream 696509 4231460 ~ 4231831 (-) True LOC117597614
TU111372 lncRNA downstream 710498 4217578 ~ 4217842 (-) False LOC113534736
XR_004578349.1 lncRNA upstream 35914 4966634 ~ 4971603 (-) True LOC117597587
TU111675 lncRNA upstream 76705 5007425 ~ 5011433 (-) True G93988
TU111702 lncRNA upstream 145420 5076140 ~ 5179801 (-) False G94010
TU111703 lncRNA upstream 145420 5076140 ~ 5179801 (-) True G94010
TU111741 lncRNA upstream 189308 5120028 ~ 5126327 (-) True G94045
XM_034305132.1 mRNA downstream 87306 4785197 ~ 4841034 (-) True LOC113534715
XM_026927227.2 mRNA downstream 250980 4642261 ~ 4677360 (-) True LOC113534432
XM_026927724.2 mRNA downstream 293583 4630852 ~ 4634757 (-) True LOC113534774
XM_026927677.2 mRNA downstream 325379 4597574 ~ 4602961 (-) True LOC113534721
XM_026927678.2 mRNA downstream 334305 4589186 ~ 4594035 (-) True LOC113534722
XM_026927814.2 mRNA upstream 42288 4973008 ~ 4976264 (-) True p2ry1
XM_026927773.2 mRNA upstream 154554 5085274 ~ 5107393 (-) True LOC113534806
XM_026927159.2 mRNA upstream 423901 5354621 ~ 5372127 (-) True ulk3
XM_026927723.2 mRNA upstream 478847 5409567 ~ 5414923 (-) True larp6a
XM_026926920.2 mRNA upstream 639675 5570395 ~ 5583415 (-) True gpib
XR_004578382.1 other downstream 435601 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 754746 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 1396649 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 2160042 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 2177171 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 1263355 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 1934548 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2217224 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 2511653 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 3537581 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile