RNA id: XM_026927346.2


Basic Information

Item Value
RNA id XM_026927346.2
length 2588
RNA type mRNA
GC content 0.54
exon number 15
gene id mtss1la
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11225550 ~ 11252652 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTTCCAGTCTCGGGTTTCAGTGCTTCATCTCGCAGTGCTGTTCAGTTTGCCATTACTGGCTTCAGAGAGGAGGTTCAGTGAACCCTGTCCTGTTGACTCTGCAGTGGATTGAGCAGCAAGTGTACTACTATGACAGAGCACTCAGTCAGTGCGTGTGCTTTCTCTTAGCCTTGACTGGGGGGTTGGGAGGGCAAAAGCAAATCTTTTGACCCCCAGCCATCATCCTGTGCCAAACCGTGGTGCACAACACACACCGCCCGGACTCGAttgctctttcttcttctctgaaATCTCTCAGCACGCTCTGATCgggatgtgatgtgatgtgatgtgatgaagtggtTCCTGATTGCTGAGCTCAGTTGATCGGAGTCGAGTCTCGCGTGTTTTTATTGCTCAGTCATTCAGCGCGTGCGGCGCGGCTTTGACAACATGGAGAGTGTGGAGAAGGAGTGCGGTGCTCTGGGTGGATTATTCCAGGCGATCGTCAACGATATGAAGAACTCATACCCAGTGTGGGAGGACTTTGGAGCCAAGGCCACAAAACTACACTCACAACTCAGGACCACAGTACTGGCGGCGGCTGCTTTCCTGGATGCCTTTCAGAAGGTGGCGGACATGGCAACAAACTCAAGAGGTGCTACCAGGGACATTGGTTCTGCTCTGACCCGAATGTGCATGCGCCACCGCAGCATTGAGGCCAAACTGCGACACTTTACCAATGCTCTTATGGAAAAACTGGTCACACCACTCCAAGACAAGATAGAGGAGTGGAAGAAGACAGCTGCTCTTCTAGATAAAGATCATGCCAAAGAATACAAACGGTCTCGACAGGAAATCAAGAAGAAGTCCTCTGATACTCTGAAGCTACAGAAAAAGGCCAGGAAAGAACTCCCAGGTCGAGGAGGGCTGCAGCCTCAGTTGGACAGTGCTATGCAGGATGTGAGTGACATGTACTTGCTGATGGAGGAGACGGAGAAGCAAGCCGTGCGCCGAGCCCTCCTCGAAGAGAGGGGCCGCTACTGCACCTTCATTAGCTTCTTGCAGCCTGTAGTGaatggAGAGATTTCTATGCTGGGAGAGGTAACTCATCTCCAGGCCATTATGGATGATCTATCTGTGCTGACCACTGATCCACATAAACTACCAGAGGCCAGTGAACAGgTTATCCTGGACTTGAAGGGTTCTGACTACAGCTGGTCCTACCAGACTCCCCCTTCTTCCCCCAGCAGTACAGGCTCCAGGAAGAGCAGCCTGTGCAGTTTGGTGCATCTACCACCAGGTGGCGCTCATCGCCTGAGCAGTGTCTCCTCTCATGATTCTGGATTCATCTCTCATGATGCCAACATGCACTCCAAACCTCCTTCTCCCATGCCATCAGACATTACCAGCCAGaagTCATCCAGCTCTGCATCCTCTGAAGCATCGGAGACATGTCAGTCTGTAAGCGAGTGTGGCTCTCCCATAGCAcAGCAGGACTGGTCTAAAATACCTCACTATGAGCAGCAGGGGGTGGCACTGCAGCGCAGGAGTGAGGCTGTGGAGTCCCCTACTGGAGCGAGAGGGTCTCTGCACCCCGAGGACCCTTACAGGACTAGAGTGAATCCTACAAACATCAGTGCCAGGCACGGGAAACCGATGATGTCTGCAGCCAGTGAGCTTGCCATGGTTCTGACACGTGGTCTGAGTATGGAGCAGCAGAAGAGCAGCTGTGACTCCCTGCAGTATTCGAGCGGATACAGCACACAGAACACCACTCCGTCCTGCTCCGAGGATACCATCCCCTCACATGGTTCCGACTATGACAGCTACTCAATGAATGGAGATGTCGAATGTGATGCTCAGTCAGACTTTGACAAATCTTCTACTGTCCCTCGGAACAGCAATTTGGCCCAGAATTACCGTCGAATGATCCAGACCAAGAGACCTGCAAGTACCGCAGGGCTTCCTGGAGGTGTGGGTGCCCATGGTGCACCTGGATCCaatggcagaggaggaggaggaggagctgtcATATCTTCTGGTACAGCCACCATTCGTCGGACACCATCCTCCAAAACTGGCGTGAGACGCACCCCGTCTAACGTGGGTCCGATTGCCATCCGTCCTCCCATCGTCCCAGTGAAGACACCAACTGTGCCAGACTCGCCTGGCTTCCCCAGCCCTCCCCCAGAGCACAATGGCAGTGAGGAAAGCTTGTACAATGAGGAACCTCTGGAGAACTTGGAGATCAAAGCTTCACCAAAGCGGATGAGCCTGCCTAACCCAGTGGCTTGGGGCACAGGCACTGGGATGCGCGTTCATGCCCAGCAGCCTGGAGCTACACTTCTCAGCACAGAGGAGGACCAGCTTCTGGCTGCCAACCGCCACAGCCTGGTGGAGAAGATTGGTGAGCTGGTGGCTAGTGCCCATGCTCTTGGAGATGGCCAGTTCCCATTTCCTGCAGACACCCAGGCCGGTCTAGGATGCCAGCAGGACCCAGGACCCCTCTCAGAAGGTGAGGACATTTTGAAGTCCATCCGTAGAGGAGTGCGTCTCAGGAAAACCGTCTGTAATGACAGGTCAGCACCCAGGATCATGCGATAG

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115775 lncRNA downstream 35240 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 38057 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 51907 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 51907 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 565028 10657192 ~ 10661052 (-) True G97246
TU116033 lncRNA upstream 143464 11396116 ~ 11477114 (-) True G97831
TU116158 lncRNA upstream 428077 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 438345 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 438345 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 499873 11752525 ~ 11753198 (-) False plekhg7
XM_026926969.2 mRNA downstream 8604 11205649 ~ 11217476 (-) True tshz3a
XM_026927490.2 mRNA downstream 46472 11173350 ~ 11179608 (-) False pdf
XM_026927492.2 mRNA downstream 46502 11173350 ~ 11179578 (-) False pdf
XM_034305384.1 mRNA downstream 46502 11173350 ~ 11179578 (-) True pdf
XM_026927545.2 mRNA downstream 54053 11169802 ~ 11172027 (-) True si:dkey-238o13.4
XM_026927496.2 mRNA upstream 8074 11260726 ~ 11269493 (-) True mapk12a
XM_026927599.2 mRNA upstream 18600 11271252 ~ 11279969 (-) True selenoo1
XM_034305167.1 mRNA upstream 27955 11280607 ~ 11290052 (-) True trabd
XM_026927075.2 mRNA upstream 40674 11293326 ~ 11307041 (-) False panx2
XM_026927074.2 mRNA upstream 40674 11293326 ~ 11307041 (-) True panx2
XR_004578315.1 other downstream 931257 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 931257 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2747844 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3611984 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4068592 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 335349 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1059430 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1145035 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1168450 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1793171 13045823 ~ 13052311 (-) True G98770

Expression Profile