RNA id: XM_026927410.2


Basic Information

Item Value
RNA id XM_026927410.2
length 10039
RNA type mRNA
GC content 0.42
exon number 17
gene id kirrel3b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6476952 ~ 6680208 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacaggcagagagagagagaggtgctcGGTGAGCGCGAGCGCAGACAGAGACCGGCCGCACATCAACAGGAGACTCAGACAGTGCGcgcacacacttctacacacacacacacgcacacacacacacacacacacacacacacatatacgcgCGCGGGCTAGAAATAAGCATCAGAGCactcaagaagaagaagaagaagaaagaagacagAAACTCATTTCTTCCCACAGAGGATTCAGCAAGAAGCGCACCCTGGCACGAGCGGCGAGAAGTTCCCGGCTGTCTGTCACTGCGCCCCAGAGCCTCAGAGGTCACCGACACCTGCTCGTGCCCAGCGCTTCCGAGATGATGGTGCTGATCCTGCTGCTCTTCTGCCTCCCGGTTCACGgagcCCTTGCCATGTTTTCCCAGCAGCCCCAGGACTTGGTGGTAGTGGCTGGCCAACCGGTCACTCTGCCGTGCTCCATTCCTGGCTACCACGGTGTTGTACTGTGGATCAAAGATGGCCTGGCTTTGGGTGTTGGACGAGACCTATCAGGTTATCCTCGCTACACTGTAATTGGAGATCACAGTTCTGGGGAACACCACCTGAGGATCCAGAGGGTTGAGCTAGCGGATGATGCTGTGTTTGAGTGCCAGGCCATCCAGGCTGCCATGAGGTCTCGACCTGCTCGACTCACAGTTTTGGTTCCGCCAGATAACCCAGTTATTGACGGAGGCCCTGTGGTGAGCCTGAGAGCTGGAGACCCACTAAACCTGACGTGTCATGCTGACAATGCCAAGCCTGCCGCCTCCATCATCTGGATTCGAAATGGTGAGGTGCTAAATGGAGCCATGTACTCTAAGACCCTTCTTCGAGATGGCAGGAAGGAGAGTACAGTCAGCACTCTGTACATTTCACCATCCAACATTGAGACAGGACAGACGATCATCTGCCGTGCGTCGAACAAAGCTGTCCCCAATGGCAAGGAGAGCAGCGTCACTATTGACATCCAGCACTTACCACTGGTAAACCTCTCTGTTGAACCCCAGCCAGTGTTGGAAGGAAACCTGGTGAAGTTCCACTGCTCTGCTAAAGCCAATCCACCAGTCACGCAGTACAGGTGGGCTAAAGGAGGTCATGTGATCAAAGAAGTATCTGGAGACACCTATGAAGTCGTAGTGGACCACTCCTTCTTCACAGACGCCGTTTCTTGTGAGGTCACCAACCCTCTGGGGAGTACAAATATCAGCCGCAACGTGGACGTCTACTTTGGTCCTCGTATGGCTGCAGAGCCACAGTCATTGCAGGTGGACCTGGGATCAGATGCTGTGTTTAATTGTGCATGGACTGGAAACCCATCGCTCACGATCGTGTGGATGAAGAGGGGGTCTGGAGTGGTGCTGAGCAACGAGAACATCCTGACTTTAAAATCAGTGAGGCAGGAGGATGCTGGGAAATATGTGTGCCGTGCTGTAGTGCCTCGAGTCGGGGCTGGAGAGAAAGAGGTTACGCTTACAGTGAacgGGCCTCCGACCATCTCCAGCACCCAAACACACCAGGCTCCTCATGGAGAGAAGGGCCAGATCAAGTGCTTCATCCGCAGCACCCCTCCTCCCGACCGCATTGCCTGGTCATGGAAGGAGACAGTCCTCGAGTCGGGCACATCCGGCCGCTACACAGTTGAGACGGTGAGCACCGAGGACGGCGTTCTGTCCACCCTGACGATGAGCAACATCGTCCCTGCTGACTTCCAGACCATCTACAACTGCACAGCCTGGAACAGCTTCGGCTCTGACACCGAAATCATCCGCCTCAAGGAACAAGGCGGCTATCATTTGTTGTCCGCAGAGTCTCTGCCTGTGGCCGTGATTATCGGCGTGGCGGTGGGAGCTTTCGTCGCCTTCATCGTCCTCATCGGCACCATCGGGGCCTTCTGCTGCACACGTTCTCAGAGAAAAGACGCTCACCTGGTTATGCCCTCCCTCCCTGCCTCGATCTGTGCTCAGCAGAGAGAACTTTCAagcaaaattaaaacagaaaACCTCAAAGGCGTCGTCTCGACCAAGAACGATATCCGCGTGGAGATCGTGCACAAAGACCACAACGCTGCGCGGGAAAATGAGGACCATGCCGCCATGAAGCAGCTGATGATTGAACGGGGAGAATTCCAGCAGGAGTCTGTTCTCAAGCAGCTGGAGGTCctgcaggaggaggagaaagaataCCAGCACATCAAGGATCCCACCAATGGCTACTACAGTGTGAATACCTTTAAGGAGCACCACGGGACCCCCACCATCACGCTGGCTAGCACCCACAACAGCACCGAACTGCGCCGTGAAACCTCCACGGGCAAGCAGCGAGTACCCACAGGCATGTCCTTCACCAACATCTACTCAACCATTGGTGGTGCGCCCAACCCTCGTTTGTACGAGTATGGTGGGCGCTTCGTCCTGGGCACAGGCAGCAGCTCCATCGAGCTGTGTGAACGCGAGCTGCAGCAGCGTGCATCCCTCAGCGACTCAGGTTCCTTCATGGACACGCAATGCGACAGCAGCGCCAGCAGCTACGCGCACTTCGACAAGGACAGCAAGGCCTCGGCCGCCTCGTCCTCGTCACACCACTCGCATTCGTCCTCGCAGAACTCGGACCTGACGCGACCCCTGCAGAAGCGCATGCAGACTCACGTGTGACGACGTCTGCAAATGATGTCAGGAAGCAGATCAAGCACACAAGCtctctttttcttattctttttgtCTCAGTAATGTCATCATAAGAGCCTCGTACAACGCAGCTTTGGAAAAATCTTTGTGGTCGCGATTCCAAATGCAGACAAGTCAAATACCCTGAACTGAGAAGAAGCACCTTGAGTGTAGTACTAGTGAGAAACGTCTCAGCTACTGTACAGAACGCCGAAACAGGATGAAACCATGctgacaaaaatgacaaaacacaTGCAATGTGTGGAAAGCAGATCATAAAAGAATGGAGGCCTCCAGAACATGAACAGACTCTACAGCGCTGTTGACACCTCCAGTCCATGATGCCTTTGGCAGCACAGAAAGACAACATCCTGATTCTCTTGtcttctcttgctctcttgtaCAGTAGACCTGTCTAAGTGAGTGTGTATTATTTGACAGTaactcttttttccctttccccCACAGCTATGACTTTTACTTCTGTGTGGATGGAAacttataaaaaagaaaagaaaagaaaaaaaaaacgagtttGCCTACAGACTTAATCACTGTCAGTCAATATAGTTGGATTCCAGTCCTTCTGGATCCAAGAGATATATAGCTCTCGGCCATTCTGATAATATCtgtacattattcattttttttaatttccttgcTGTCTTTTGTCAGTCTGATCGTatgttttcttctctctttcgtGATTGTTGACTTTGCTGAACTTAACAAGGACTTACAAATGGatgatttgatctttttttatcTAAGATGATGTAAAATGCACAGGAtgttttggccataaagtgggAACAATGCAAATATTTTTGCTACTTCGTTAATGAAAGAAGGCTCAGACAGTGTGTGGCATGACATGGTCTTGTGAAGCCTCATACAAACCAGTGACACGATTTACACCATATACACTATTTACCTTTCTGTGGCTTTTAAGTCTTAGTATATAGTCATGTTGTTTACACTGACTGAAAGATTAATGGCTGAAAACCCCTGGACGGAGGGAAAACATTCCATCTGCTCTCACAGCCTTCAGACTGTACTGCAGTACACCTGCTCACTGTTTTAAGTGAACTGTCTGCACACTGAGATGTACCATTGAGACTCTGATTTCATTCTAGATTTGTTTGTACGatgtttgctcttttttttcagttgagaGCACTTAAATTTACTATggattacacacacaagcacctgTACTGATGCACTGTACAAACAAGAGCCAAAAGCAGAGCAGGAAGTAGTAAGAAGATGCACAATGCATGATGCATGCCAGGTGCAGACTGAGGCAAGCAGGTGCTGTTTGGTACGATTACAGCCTCATCTACatgatatgtatatgtattacacacactgttttgcCTGTGAGGCTTTGAGTAGAAGAAATTCCAAGTTTCTGATAAGGCAAGGACACCAGATAAGAATACACAGGATACCAGGTTTCTCTTTTCGTCAGCCGGCTCAACTCGCGTGCAGTGTGAGAACTGAGATTAAACATGAAGTGATAGCTGCTAGGGGTTGGACAGCTAGTCGACcagtaatttaacattaaaattacttttttcaaaattaaccttttccatagttaaaacaaaaactgattcaGGACGTCACTATTTTAGGCTGTTTTTTTAGTGCAGTTAAATGTTGATAAATAACAGCAAGGAATGCATCAAACTGCACCTCAACTAACAGATATAACCACAATTACTAGCTGTACAGGGGCTACACTTGCTTCTTTAGGCTACATGGTTAACAATGAAAATAACAAATCAGTGTAATAAATGTCCAAAATGATACACAGGTTttatcatattacactatttaaagCCACACtaattcttaaaatgcactcgCATACTCAGTTGAAATagttgattctgaaactgagagcgCACAACATGGAAACTTATGTCCATCAAAAGACCCCTTCCTTAAAACTCAGTGACCGGCCCTCTTTCTGTGTAGAACGCAATGTCTTAGGCAGCCACTGGGAGGTTTTTCCAAGCTGATGACCTGGCAGTTGAACCACTATGTTCAACTTTGTCCCCAGTAGCATCCGAAAAGGACTATGGATCAGCCTCTAAACTATCGGAGTTGCATTGCATAGTGATGTGCAAATGTAGCTCTGAAAACACTCCCTCACAACACTGGTCTTCATGAAGGAATTCATTATGccaaagtgaaggaaaaaaggataaagaaaaaaaaattgatccaAATTGGTAAAGTGATAATgatccattaaagcaaaagaaaataaaagaagactTTTCCCAGCATAGTCTTAAACAATGTGGTGTTGACTGTATTCTGAACTGGTTTCAactattatgaaatattttcagactaacaaattacatttaatctGCTTTACTGAGCATCTGTGTTACTGTTTTTCCACCACCCCAGCTAGTCAACAGCTCCCAACAACAGGAACTAGTGAATTTACTGGTCAACTAGTCAATTAGTATATGCAACCCCTAGTAGCTAGACAGTTCGGTGTGGAAAAGTTACCTGAAAATTACACTGGACATTTGTTGATGACTGCATCATGTAACACCCTCCTGCCAGTCTATACCACTCACATTCCAAATGTTACCATCGGTACAGAATAGATAACTTGATCAAGAAATCTAATGCCCATGCATACTGTATCAATAGAACATTAGGCGTGGGAACAGTCAAAGCCGATCCAGCCTCAATTACAAAACCGTTTATTTTAAAAGGTGACACGAGACAAtaagaaaatgattaaacatatttgtgtttattcccGTCATCACTGTAAAACACCTTGCTCAATAACAGCACAATCATGACATTGTTGTAGATAATGATGCTAAATCAAGTTCACAATGTATAGAAAGTGGGAGTTTGAAATTTCAGTGCATCTCTATGGAAACTGTGAAAGAATATGGAGCTGGCAGGATGTGTGGGCTTGCAATTATATGTATGTTGCACATAACAGTTAGCTAGTGTGGATTAAAATGCTGGTTAAAATGGAAGCAAAGTCTGCTTCAGAGATTCACCCTGTGTGAACTGAACTTCAGACAGCACCGTCTTATAAAACATTCATGTACATCGTCTGTGCAGTTTATGAAACATGTTGATGCAAAGTTTCCCTGTTGCAGAAAAACTTTTAGCTCGGTAATGACTAGTTCTCATGATTTTGTTGCTATTTAACTTTGTAGAGGTATAGAATGTTCAGAGCTCAATTTTAGTACTAGAGTCCAGAGCACTTTGGCAATCTCCTTCctttaatacagtaaataaacctGGTAATTaactgattagttgaatcagttATCTTGcagggaaatcaccaaactgtgctgGATTCTGGGTTTCCAGGGCTGGAATTGGCTGGAATTGGCCAGCTTATGGCCTAGGGGTCATCAACTGTTGGGCCACAGCCCATATTTCAGTGGATTAAACCaagcactcaaaaaaaaaatactgcagcagaAGCGAGAAAGAGAAATTGGACAGAGAAGTTGCATTTGTAATCAAGTGAATACCCATGCTCTATACTCTTAGGTTTCCTCAAGGGTTCTCTGGATAGTTATGGATATTTGCTTCCTAAGGTAATACGTATTTACAGTGGGCTAAAACAAAGCCAATTAGGATTCTAGATTTATATTTGCTACCAAGGGTGTCTAGAGCTTGGAGGTGATGGTTTACTTtcagtagaagaagaagatagagaaagcaaaactgttttaaaaaatttccattgttcaattaaatatataaaacattgatATGACTTTTATTGGTCTATCTCCCAGCGTGCCATCGTGAAGTGCATTGTTATAAAGGCTCTTGCGTGCAATGCACCATCTGTGAATGGGTCATGAAAGATTTATGAAGGATATGTTAGAAACTTATTGCAAATCGTTACAGTTTGGAGTTCTTTCACTACccctcccccttttttttcaaataatccATCTGCTATAACAAATTATTCATCAGATAGTGAATCAAGCAATTGATCAGATCAtccatttactttctttttaatcttccaatgcttttgttctttctttaaaaaatcaaattacTGACTGCTAGATTTTCAACCCACATCTCAGCCAGTCCAGGGTTTTGTTATGCTCCAGTTCCCAACATGTCAATTAGTTAATTAAAGGCTGTAAAAGCTTGAGTAAAGTGTTTCACCATCAATTATGCAGATGATACGTTTTATAATCAGCTTAAAACTCTGACCTAACCTTTGCAGGTAGGTCAGGTGTTTATTTCGGTCATTACTCCACTAACAAACCCGTCATTAGGAGGAAGGGGAAGACTGTATCCTGCTTATTAGACcatgtaaaacattttcactgttcTAACACCTCTGCTCAGCTCATGAAGATCCTAAGaataacagtgaaaaaaatacagaaatgtacagTGCATGATTTCCATCATCATCTTTCATAAGACTACTGTAGAAGTGTCATTTAAGTCAAATCAGCATTCAGGGCGCAGGCGCGTGAGATGAGTCATAAGATGCCGCAAACACTTTCCATAGCATTATATTTGCATTTCTGTAAGCTTTCATACATGAGTGCTGTTGACTGGGTCTAATTTTACAAATGGATTGGTGCCCACTGCAAGGCTTAAACACAACAAGCCTGTTTCACTGCTGATAATACAGCTCACAGCTTTCCATGTGCTTTATATGAATCCCTAATGCTCTTTGTATATAATTTGCTGTTATTTACCTTTCTTCTTTAGTTAGTTTGGATATTAGAAGGCGAAATGTCATTGACACTGTACAgacattcactttttttttgtagtttcatAAGAGAAAGTGGAAAACGTGGAGCTGGACATTTCTAAAAAAGAGACATTTGCAGATAATTTCTTCATGAatttctttttccactttttttttttttttacacaaaccaTTACTGTAACTCAGATGTTGGAAAATTGTGCTTCTATTAAACCATTAATTATGAGTTAACCTTGAATAGGAGCACATGaattctatcattttttttctgcatgcacagtgtacagtgttctTGGATACTGAAAACGGTGGATTCATTAGTTCTGTACACCATTTTATCTTCCCAAATCACTGAAGCTTGAAGCAGTACATGTAGTTTCATAAGACAACATTAGCGTTTAAGGAGTCCTTGTTTGAACCAAGCTGGAGCTGAATTTGCCCTGAAAATGGCCTTTTACAGataattttctcttttgtttcagttcatgttttttttttcattatccttacattttttaactatatatttttaaaactcattaCTGTACCTACTAAACCATAATTTTTGAATgatatcaattattattatattggtACAAGATTTTGACTTGCGTCACTAATTTGCTAATTTTCTTGCTACATGTTTTCACAACCACTAACTCTCCACAGGGCAATGGGCAGGCTTAGCAGTTGTAGCTTTTCTAAATAAGTAATTCATATTAAACGTTATATATGTAATAGCTCTCCACATTTTGCATGAGATCAGGCTGGGGTTATCTGCTCTTTAATTCCAACAATGTGTCCAATAAACCCCACAGCAAATCCAGAGCTATTTTTGAATTGTTCCTCCTTTCCACCTCCATCTTTAAAGCTACTGACAGCATTGTTCATGCAGTCCATCGCAATGCCCTTTAATATAGCATAACAGCACGTGACAATATTTTGCACCATATGGAACAGTTTATAGCACTTATACAGCATGGCAGAAAATATCTATGGCATTAACTCTAACAGAACAGAGCACCCGGATTACAAAGTTGATCTACAGATTGtttgaatagtgtgtgtgtgtatatgtacctTTCTTATCACACAATGCTGGTGGATTTAATCCTGTCCAAATGGGCACTGAGTGATTATATACACTTGTCCAAGCCACAGAGTCAGATAAGGATGGTGAAGGTTAAAGCGCTGACATGGGGAAAACTTTGGGCTGGATGTGGATGTGGCTTGCATGTCCTCTCCATTCctttttggaaatattttccCAGCCATTGGGTGTACAGTGTGATAAATTGCTTCAAATCTGTCCTGTTCTGCCATACTGCCTGTTTTCCATGTTTTGCTATCATGATGAGTCACTGAAGATGATGAGCGAGATGCAGACACAGGTCATACACTTGACTGGCTAGCTCTATTTCAGGTAATTTCTCTTCCCAGCAGCTATATTGCATCAGTAAGTTGTGTTCTGGCAAACCGTTGATAGTATGAATTCAGAAAACAGAGTGTGTAAATCAGATAGCATTGATGAGTAAAGCCGGGTTTACACTGCATGATTTTGTACAAGAATTCTTTGGTCACAAGTTGAGATCGGTGTTCCTACAATGCTCGCTCACCAGTGGCTTATTTAGTGCCATTGCAGCCAAAAAGAGCCGATAACAAAGTTCTGGCAACCTTAGATTATTATCAGAGTGTGAGTGCTGCTATGTCTCATTCATTTACTAGGTCTTATTTTGATAAGCTTTCTCAATATTAAGACTTAAATAGTAGAATTGTCTCTACAAGTGGCAAAAACAGGCTTCGGCAATTCTAATACCTGTCCTTTGGTCATACAAATCTTAGCCCCGCCAAAGTGACTTGCAAGCTTAAGCCAGCTTTACACTGTGCAATTTTTGGCCCAATTTTACTGTTGCAGACAAAAGACTAGATAATATGACTAAGTAATATGTAGTTTTCATTGGTGGCCAATGTAAAGCCATTTCAACCAAAGACAGCCAAGAAGAAAGTTCTGGatatgtcagattttttttttaaatctcaaagtGTCATTAACACTCATGAAAATCCACCAGTAGGAGGATGGCAAAGGATTATGCGAAAAtgaagaaacataaaaaaatactaatggccatgaaaaatatccttattacctcaataTCACTTTGAGGAATGTGTCTATACTCCATTTCTCTGTATAAGTCCAGATTTCACTGATCAATGACATAAGCAGAAagtagtcattttctttaatcacagctctatcattagaggattttcatcataaaaatctgacatggagaacacattattacacagaGTGCTTTACATTCCAGCCAAGATTTTAATGGGATCATCTCGTACATTGTAACAAGTAATAATCATAAAAGAGCATTGAAATCACATAGTGTAAAACTTGCTTAACTTTGTATGAAAGCCATGGTATCAAAGCTATCTTGTCTTGGCCTGGTGTTCCTttctacacaatacacacaaaaccATGAATCTCAGAATATCTCTGGTCATAGTGTAATTGCCATGGGCATTTTTTTtatgcctgatttttttttttttttttgactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112547 lncRNA downstream 90668 6385400 ~ 6386284 (-) True G94761
TU112499 lncRNA downstream 195693 6272238 ~ 6281259 (-) False clmpb
TU112524 lncRNA downstream 209162 6263752 ~ 6267790 (-) True G94746
TU112523 lncRNA downstream 216807 6259340 ~ 6260145 (-) True G94745
TU112522 lncRNA downstream 217920 6258115 ~ 6259032 (-) True G94744
TU112884 lncRNA upstream 321440 7001648 ~ 7002634 (-) True G95072
TU112878 lncRNA upstream 406303 7086511 ~ 7088041 (-) True G95066
TU113068 lncRNA upstream 647280 7327488 ~ 7327703 (-) True G95227
TU113311 lncRNA upstream 656157 7336365 ~ 7336566 (-) True G95440
TU113322 lncRNA upstream 707524 7387732 ~ 7430763 (-) True G95449
XM_026927437.2 mRNA downstream 195422 6197243 ~ 6281530 (-) True clmpb
XM_026927517.2 mRNA downstream 305833 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA downstream 305833 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA downstream 305833 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA downstream 305834 6048476 ~ 6171118 (-) False gramd1bb
XM_034305150.1 mRNA upstream 312928 6993136 ~ 7035230 (-) False ets1
XM_026927119.2 mRNA upstream 312928 6993136 ~ 7032742 (-) False ets1
XM_026927120.2 mRNA upstream 312928 6993136 ~ 7017324 (-) True ets1
XM_026927116.2 mRNA upstream 316207 6996415 ~ 7035229 (-) False ets1
XM_026927118.2 mRNA upstream 316207 6996415 ~ 7035192 (-) False ets1
trnam-cau_19 other downstream 282805 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 1984213 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2303358 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2945261 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3708654 2759612 ~ 2768298 (-) True G93047
trnap-agg other upstream 185060 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 467736 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 762165 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1788093 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 3588269 10268477 ~ 10294823 (-) False ttc38

Expression Profile