RNA id: XM_026927417.2


Basic Information

Item Value
RNA id XM_026927417.2
length 1704
RNA type mRNA
GC content 0.46
exon number 10
gene id aagab
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13956433 ~ 13961386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTCGCGTACGTCATGACGTCGTAGCGCGTCAGTGCGGAAGTTCAGGGTTGAGGTTGGAGTTGAGAGGTTCCGACTCTGAGAGAGCGATATTGAACACTAATAGTAGCTCATTAGCTGTCAGCACGACTGAAACATGTCAGGAGACAAAGACGAGGGAGAGACTGCACTACCTTGTGTTCTAATAACAAGCTGTGAGCCTGGGTTTAAGGAAGAGGAGCTTGTCAGGCAGATCTTGGGTGCATCATCATTACCAGAACCCACTAAAAAGGAAGATGTAGTGGTTTGGTATCCATGGACAATCAACAACAAATACTACACTGCGAATGTCAGCCTTTGTGTTGTGCCAAGTCCGTTCAACATGAATTCAGAAGTTGCCCAATCCACGCAGGCTTTCATTGTCTACTTTGACAGTAAAAGTAAAGATGGCCTTACTGCTGTCACTCCATGGGTTGCCCTGGTGGAGGAACTGGCTCCTGAGGTGCTCATCTTGGTGTGTGACCATGTTTGTGAAAATGGTGTAACCAGACAGGAAGCTCAGCAGTGGTGCCTGGCTCATGCATTTGAACTGGTGGAGCTCAACCCTGAGGAGCTGCCTGATGAAGATGATGACTTTCCAGAGTCGACAGGAGTGAAGAGGATCATTCAGGCTCTCAATGCTAATGTGTGGTCCAGTGTTGAGATGAAGGATGAACACAATCAGGGATTTGGTCTGATGAGCAGTTTGGTTGCATCTCGGCACAACAACCCACGATCTATAGGAGAAACACAGtgccAGTCTAGCAGTGCAGAAGAGAACACAGATGGACAGAAGACAGGAAGCTGTCAGAACAGTACAGAGGAGGTGGACCCAATAGTAGACCCGATGACTGACATGGACATTCAGGAGCTGGCCAACCTCACAGCTGGAGATGCAGATGTGGACAACTTTGAGCGTCTCTTTACTAAACTGAAAGAGATGAAAGACAAAGCTTCTTCATTGCCACACGAGCAAAGGAAGGTGCACGCCGAAAAGGTAGCCAAAGCATTTTGGATGGCAATCGGCGGGGACCAGGACGAGATTGATGGTTTGTCTTCAGGGGAGGAGAGCTAAAGCAGTATTCCATTCCCCAGCACCAGTTTGTTGCCCATAATCCTCCAGCACTGCCGTGTGATTTGCAGCCTGAGTCTTGGGCACCGGGTTGTGGCATCAAGAAATATGTGTGGGCAAGATGGGGAAAGAGAGGCCGAGAGGTTCCTCATGCTACTCTGGTTATTCCTCTCTCCAACACCAGCACCTCAGTACCCGAGTGCACAGCCAATATGGGCTGCTGGCTTTTAAACACTATAATCTAAGTTGGAGGGGAGAGGGTGCGGCAGCCAAGAGATTACCCAAAACTACTCTGGAGTGGGTCTAAACCAAGATCTGTAAATCCATCCACGTATTGCATTGTTGCCCTTgaagtgtgtttgtatgtgtgtgtacaagctATCTTTTGTTATGAGAGCAGAAGGTGTTTACTATTTTTTGTCCAGAATATAGAAGGTCATAATTATGGAAAAAACACTGTGGTTGGTTGTGGCCATTCAAATAATTTGTCAAAATAACCTTGCATTTTTATAGTCACAATCTGACCAAGATGcactattaataattaacatttctgacatattcatttcattcatctaTTCATTAAATTGTCTTTGTCTCCATAACAAATATGTC

Function

GO: NA

KEGG:

id description
K23878 AAGAB; alpha- and gamma-adaptin-binding protein p34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117596 lncRNA downstream 5712 13950147 ~ 13950721 (-) True G99187
TU117597 lncRNA downstream 9522 13944751 ~ 13946911 (-) True G99188
TU117593 lncRNA downstream 23499 13932553 ~ 13932934 (-) True G99184
TU117569 lncRNA downstream 112196 13843999 ~ 13844237 (-) True G99166
TU117568 lncRNA downstream 113204 13842819 ~ 13843229 (-) True G99165
TU117611 lncRNA upstream 73881 14035267 ~ 14035541 (-) True G99202
TU117858 lncRNA upstream 318057 14279443 ~ 14630745 (-) True G99396
TU117878 lncRNA upstream 367541 14328927 ~ 14334134 (-) True G99408
TU117867 lncRNA upstream 388332 14349718 ~ 14355619 (-) True G99401
TU117912 lncRNA upstream 487470 14448856 ~ 14453107 (-) True G99433
XM_034305074.1 mRNA downstream 146440 13806984 ~ 13809993 (-) True snapc5
XM_026927443.2 mRNA downstream 146442 13806984 ~ 13809991 (-) False snapc5
XM_026927651.2 mRNA downstream 151259 13797624 ~ 13805174 (-) True lctlb
XM_026927442.2 mRNA downstream 166891 13786147 ~ 13789542 (-) True rpl4
XM_026927093.2 mRNA downstream 192977 13652058 ~ 13763456 (-) False megf11
XM_034305430.1 mRNA upstream 295161 14256547 ~ 14265263 (-) True kif23
XM_034305431.1 mRNA upstream 295161 14256547 ~ 14265261 (-) False kif23
XM_034305432.1 mRNA upstream 295161 14256547 ~ 14265259 (-) False kif23
XM_034305433.1 mRNA upstream 295161 14256547 ~ 14265257 (-) False kif23
XM_026927471.2 mRNA upstream 304698 14266084 ~ 14276651 (-) False paqr5a
XR_003403533.2 other downstream 167586 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 168234 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 168647 13787657 ~ 13787786 (-) True LOC113534844
XR_003403542.1 other downstream 169231 13787134 ~ 13787202 (-) True LOC113534850
XR_003403543.1 other downstream 169585 13786778 ~ 13786848 (-) True LOC113534851
XR_003403523.2 other upstream 374550 14335936 ~ 14347008 (-) False dennd11
TU118530 other upstream 1385780 15347166 ~ 15354637 (-) True tmem170a
XR_004578368.1 other upstream 4125269 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 4226061 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 5389376 19350762 ~ 19350943 (-) True LOC113527011

Expression Profile