RNA id: XM_026927436.2


Basic Information

Item Value
RNA id XM_026927436.2
length 2535
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113534546
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3899911 ~ 3905480 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttcaaatcaattCTGATCCTCCCTGCAGCTTTCTAGGGCTGCCCAATCCTCCTCTACTCAGCAAAGATGGGGATCTCCTGATTGGTGGTATCTTTTCCCTCCACGTCAAATGGGAACAGACAACACATGTCTTTACATCTGAGCCCTGGCAACCAAAATGCAGAAGTTTAAGCCTCCGTGAATTTCAAAATGTACAAACAATGTTATTTGCCATTGAGGAAATCAACAACAGAACTGATATTCTTCCTGGAGTCAAATTGGGTTATAAAATTTATGATTCCTGTGGATCAGTAGAAATAACTACAAGAGCCTCCTTGTCCTTAGTTAATGAGAATGGAAAAAATACATCTGGAATGTCTTGCTCCAAACCTGATACAGTTCAAGCAATCATAGGTGAAACATCCTCCAGTCCCTCTATTGCCTTTGCCGCTACTATAGGACCTTTACACATACCTGTGGTCAGTCACTTTGCAACATGTGCATGCCTAAGTGACAGGAAGAAATTCCCATCTTTCTTTAGAACTATTCCTAGTGATTACTACCAGAGCAGAGCTTTGGCTAAGTTGGTCAAGCATTTTGGTTGGACATGGGTAGGGGCCCTATGTAGTGATAATGACTATGGGAACAATGGCATAAATGAATTCATCATTGCAGCCAAAGAAGAGGGAATCTGTGTTGAGTACTCTAAAgcattcttcaggacagactccagagaaaaaattctgaaattagTTGAGATTATCAAAGCTTCAACCTCCAAAATTATTGTAGCATTTGTCTCATATGCTGACCTTGGGATTCTTCTAAAAGAAATGGCCTTACAGAACTTGACTGGGTTTCAGTGGATTGGAAGTGAGTCCTGGATTTCTGTGGACATAAACCCAGCTAATGCTCCATGGCAGCACCTTCTGATAGGATCCATGGGTTTTTCTATGCCAAAAGCTCAAATCAAGGGCCTAGGGGAATTTCTGACCAAGCTTAATCCAGCTTCTGATGCAGCTATTTACAAAGAATTGTGGGAGACAATATTTGAATGTAAGCTTTCCACACAAGAAAATGTTGAGatgaaagaaatgtgcaaagGTAATGAAAGTCTCAGACAAGTTCAAAACCTTTATACCGATGTTTCAGAATTACGAATCGCAAATAATGTTTACAAGGCTGTTTACGCTGTGGCTTATGCCCTGCATAACAGATATAGCTGTTCAAAGAGGGACAGTGGACAAGAAGGTTCTTTTGCATGTGCAAACATAACAGATAACAAACCCTGGCAGGTATTCAATGAGTTGAAGAAACTCCGATTCACAACTACGGCTGGAGAGGATGTATACTTTGATGAGAATGGAGACCCAGCAGCTAGGTATGAACTGCTGAATTGGCAACAAGGTAACAATGGTAAAATAGTGTTTGTTAAAGTGGGCTTCTACGATGGCTCCTTGCAAACACACCTTCAGCTGTCATTTAACAACATCAGTATAGCCTGGGCCCACAACAAACCACAGgTTCCAGTCTCAGTTTGCACTCCAAGCTGTCCCCCGGGCATGAGGAAGGCTGTGCAGAAAGGAAGGCCAATCTGCTGCTTTGACTGTATACCATGTGCAGAGGGGGAAATCAGTAATATAACAGATTCTATTACTTGTATCAAGTGCCCACCTGAACTGTGGTCAAATGACAGGAAGGATACCTGTGTATTCAAGCTGGTGGAGTTTCTGTCATTTGAGGAAATAATGGGGATCATTCTTGTATCATTTTCTTTGTTAGGAGTGTCTTTCACCATCTGCATTgctgtaattttctttaaacacaAGGACACACCTATTGTTAGAGCAAATAATTCTGAACTAAGCTTCTTGCTGCtgttctctctgactctgtgtttcctctgttcaCTAACCTTCATTGGTCAGCCTTCTGCATGGTCCTGTATGTTGCGCCATACAGCATTTGGGACCACGTTCGTCCTCTGCATCTCCTGTGTTCTGGGAAAAACGGTAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCAGGaagtaatgtaatgaaatggtTTGGGCCTCTACAGCAGAGGCTCAGTGTACTTGCCTTCACTCTTTTACAGGTCATTATTTGTGTACTTTGGTTAACAATATCTCCTCCTTTTCCCTACAAAAATATGAAGTACTACAAGGAAAAGATCATATTAGAATGTAATGTAGGCTCGGCTATAGGATTTTGGGCCGTGCTAGGTTACATCGGATTCTtggctgttttgtgttttattttggcttTTCTGGCCCGCAAACTGCCTGACAATTTCAGTGAAGCCAAATTTATCACATTTAGCATACTCATATTCTGTGCAGTTTGGATCACCTTTATTCCTGCTTATGTCAGCTCTCCTGGAAAATTCACTGTAGCTGTagaaatatttgccattttaacatcaaGCTTTGGTTTACTATTCTGCATATTTGTTCCAAAGTGTTATATAATCATGCTGAAACCAGAGAAGAACACTAAGAAGCAAATCATGGGAAAACCACCTGTTAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111281 lncRNA downstream 164519 3735097 ~ 3735392 (-) True G93639
TU111190 lncRNA downstream 318705 3579017 ~ 3581206 (-) True G93557
TU111130 lncRNA downstream 445540 3425023 ~ 3454371 (-) True G93505
XR_004578300.1 lncRNA downstream 477753 3406145 ~ 3422158 (-) True LOC117597513
TU111001 lncRNA downstream 532716 3366721 ~ 3367195 (-) True G93380
XR_004578346.1 lncRNA upstream 39507 3944987 ~ 3946376 (-) False LOC113534402
XR_004578345.1 lncRNA upstream 39507 3944987 ~ 3946376 (-) True LOC113534402
TU111341 lncRNA upstream 167735 4073215 ~ 4073533 (-) False LOC117597611
TU111357 lncRNA upstream 249777 4155257 ~ 4155497 (-) True G93707
TU111360 lncRNA upstream 266593 4172073 ~ 4172312 (-) True G93710
XM_026927701.2 mRNA downstream 7987 3883628 ~ 3891924 (-) True LOC113534749
XM_034305407.1 mRNA downstream 17461 3879357 ~ 3882450 (-) True LOC113534540
XM_034305334.1 mRNA downstream 35763 3861544 ~ 3864148 (-) True LOC113534750
XM_026927445.2 mRNA downstream 45681 3851064 ~ 3854230 (-) True LOC113534557
XM_026927703.2 mRNA downstream 59515 3837169 ~ 3840396 (-) True LOC113534751
XM_034305335.1 mRNA upstream 4489 3909969 ~ 3913118 (-) True LOC113534748
XM_026927155.2 mRNA upstream 25074 3930554 ~ 3933690 (-) True LOC113534399
XM_026927156.2 mRNA upstream 35017 3940497 ~ 3943963 (-) True LOC113534400
XM_034304936.1 mRNA upstream 53901 3959381 ~ 3962625 (-) True LOC113534747
XM_026927157.2 mRNA upstream 59392 3964872 ~ 3968726 (-) True LOC113534401
XR_004578380.1 other downstream 368220 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1131613 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1148742 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2131116 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 2251625 1628629 ~ 1648286 (-) False sema6dl
TU111361 other upstream 267808 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 587066 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2288595 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2959788 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 3242464 7147944 ~ 7157488 (-) False LOC113534453

Expression Profile