RNA id: XM_026927458.2


Basic Information

Item Value
RNA id XM_026927458.2
length 1438
RNA type mRNA
GC content 0.48
exon number 2
gene id mterf2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11406563 ~ 11408320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGAAAAGTAGAACAACAATATTCTGGTGTAAATATGCTGCACTAGATAGCTGTAGAAACGATTGTTTAAGATCCTATGTAGTGGACTTATACATGAGACTGTGTTTGGACTCGCTGgggttgtttgttgttgttttgtaaaGTGCCCATAGGTAGCAGACACGCACCTGTGACATGTGCAGACATGCTGCGCTCTCTCACAGTGTCCCTGATGTTTTGCCGGCGGGCCCAACAGCTCCCCAGGATGCATTGCTCCTCCATCAGGCAGGTTGAGAACACATCTGCCGTTGATGCACTTTACAACCTGTCAGTCGACATCTCGAAGATCCGAAAGCTCAAGGGCTGGGTGTTGTACCAGAGCCCAGTTTATGTGATGGAGACTGTGGCCATGCTGAGAAACTTGGGAGCCAGAGACACGCTGATTGCTCAAGTGCTTGAACACCACCCAGAGGCAATCCTCTGCCCACCTGAACATTTGGAGGCTCAAAAGGAACTGTGGATGTCCATCTGTGCCAGCCACAGCCATCTAGTTGGGATCATTGAAAAGTTTCCAGCCTCATTTTTCACCTCATCATGCCATATTGACCACCAAAGGGCCAATGTCACGTTCTTCCAGAACCTGGGCCTTAATAAACGTGTCATTGCTAAGCTGATGGCGAGCGCCCCGCAAAACTTCACAAGACCTGTTGAGCAGAACGAGGAGATGGTCCAAGCCCTTCAGAAGACATACTTGGAACTAGGAGGAAGTGAGGTCAATATGAAGGTCTGGCTGCAGAAGCTGCTCAGTCAGAACCCATACGTGCTCATGAAGTCTCCAGAAACCATGAGGAATAACTTCAACTTCCTGCATAAACAGGGCTTCACCAGCAGTGAGCTCCTTCAGCTTCTCTCCAGACTTAAAGGCTTTGTCACAGAGCTTCACCCAGAATCAATGGGTCTTTCTTTGAGTTACTCGCAGGAAACGCTGGCCTGCAGTGATGCTGAGCTACGACAGATCGTGCTGCAGTGCCCAGCATTGCTGTACTACTCTGTACCCATTTTGACAGACAGATTCAAATGCCTTCTCGGTGCTGGAATTAGCCTGCAGCAGATCATGCAGACACCCACCGTCCTGGAACTGACCACACAGATTGTCCAGTATCGCATTCAGAAGCTGCGTTCTTATGGTCATGATATTAagacagggagcctggagctccTCAATGGCACTAAGAAAGACTTTGAAATGAACTGTGGAAAATTGCTTCTGAGGCGAGAGCGTCCACTCTTTAACCCAGTAGCACCTCTAAGGACAGACGAGTGAGATTTCCTGTTGTGAAATGGTGCTATAAGCTTCTAATCAGAATCTCAAGGTTAACTCTGTTTATTGTCCTGCTGAATAACACAGCTATGTAGGTGTAATTACAGAGattatgattaaataattatgaCTCCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115775 lncRNA downstream 215723 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 218540 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 232390 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 232390 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 745511 10657192 ~ 10661052 (-) True G97246
TU116158 lncRNA upstream 272409 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 282677 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 282677 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 344205 11752525 ~ 11753198 (-) False plekhg7
TU116261 lncRNA upstream 462659 11870979 ~ 11871109 (-) False sspn
XM_026927787.2 mRNA downstream 23972 11320829 ~ 11382591 (-) True btbd11b
XM_026927055.2 mRNA downstream 88371 11308950 ~ 11318192 (-) True mlc1
XM_026927075.2 mRNA downstream 99522 11293326 ~ 11307041 (-) False panx2
XM_026927074.2 mRNA downstream 99522 11293326 ~ 11307041 (-) True panx2
XM_034305167.1 mRNA downstream 116511 11280607 ~ 11290052 (-) True trabd
XM_026927786.2 mRNA upstream 41164 11449484 ~ 11453878 (-) True tmem263
XM_026927467.2 mRNA upstream 61768 11470088 ~ 11484458 (-) True ric8b
XM_034305557.1 mRNA upstream 81322 11489642 ~ 11506690 (-) False rfx4
XM_026926955.2 mRNA upstream 81322 11489642 ~ 11506688 (-) True rfx4
XM_034305558.1 mRNA upstream 81322 11489642 ~ 11506687 (-) False rfx4
XR_004578315.1 other downstream 1111740 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1111740 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2928327 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3792467 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4249075 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 179681 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 903762 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 989367 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1012782 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1637503 13045823 ~ 13052311 (-) True G98770

Expression Profile