RNA id: XM_026927464.2


Basic Information

Item Value
RNA id XM_026927464.2
length 2355
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC113534568
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3812967 ~ 3815736 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCGTGAgtctcaaaatgcacaaacaatGTTATTTGCCATTGAGGAAATCAACAACAGAACTGATATTCTTCCTGGGGTCAAATTGGGTTATAAAATCTATGATTCCTGTGGATCTGTAGAAATGGCCACCAGAGCATCACTGGCCTTGGTTAATGGCATTGGAGAAAATACATCTGTAATGTCTTGCTCTAAACCTGACACAGTTCAAGCAATCATAGGACAAACATCCTCCACCCCCACTATTGCCATTGCTGCTACTGTGGGACCTTTGCACATACCTGTGGTGAGTCACTTTGCAACATGTGCATGCCTAAGTGACAGGAAGAAATACCCATCTTTCTTCAGAACTGTTCCCAGTGATTACTACCAGAGCAGAGCTTTGGCTAAGTTGGTCAGGCATTTTGGCTGGACATGGGTAGGGACCCTATGCAGTGATAATGACTATGGGAACAATGGCATAAATGCATTTATCATTGCTGCCAAAGAAGAGGGAATATGTGTTGAGTATTCCAAAGCATTCTTTAAGACAGACCCTAGAGAAAAAATTCTGAAAGTAGTTGATACCATCAAGGCTTCAACCTCCAAAGTTATTGTAGCATTTGTTGCATATACAGACCTCGGGGTTCTTCTAAAGGAAATGGCCTTGCAGAACTTGACAGGGTTTCAGTGGATTGGAAGTGAATCCTGGATTTCTAATATAAACCCAGCGAATTCTCAGTGGCAGCATCTTTTGAAAGGGTCTCTGGGTTTCGCTATGCCAAAAGCTCAAATCAAGGGCCTAGGAGAATTTCTAACCAAACTAAATCCAGCTTCTGATGTAGTTTTCTACAAAGAGTTGTGGGAGACAATATTTAACTGCAAACTTCTGATAGAAGAAAATGATGAGGTGAAACAAAGGTGCAAGAGCAACGAAAGTCTCAGTCAAGTTCAGAACCTTTATACAGATGTTTCAGAATTACGGATcgcaaataatatttataaggCCGTGTATGCTGTGGCTTATGCCCTGCACAAGAGATATGGCTgttcaaagagagagaggggacaaGAAGGTCCTGCCTGTGCAAACATATCAGATAATAAACCATGGCAAGTAGTGAATGAGTTGACGAAACTCCATTTCACCACTACAAGTGGAGAGGATGTATACTTTGATGAGAATGGAGACCCAGCAGCGAGGTATGAAGTGCTGAACTGGCAACAAGGCAAAAATGGTGAAATAGTGTTTGTTAAAGTCGGCTTCTATGATGGCTCTTTGCAAACACACCTTCAGCTGTCATTTAATAACATCAGTATAGCCTGGGCCCACAACAAACCACAGGTGCCGGTCTCTGTGTGCAATCCGGGTTGTCCCCCTGGCACCAGGAAGGCTGTGCAGAAAGGAAGGCCAGTTTGCTGCTTTGACTGCATGCCATGTGCAGAGGGGGAAATCAGTAATATAACAGATTCTATATCTTGTATGAAGTGTCCTCCGGAACTATGGTCTAATGACAGGAAAGATACCTGTGTCTTAAAGCTGGTGGAATTCCTGTCATTTCAGGAAATAATGGGAATCATTCTTGTATCATTTTCTTTGTTAGGAGTGTCTTTCACCACCTGCATtgcagtaattttctttaaacacaAGGACACACCAATTGTTAGAGCAAATAATTCTGAATTGAGCTTCCTGCTGCtcttctcactcactctgtgtttcctctgttcaCTTACTTTCATTGGTCAGCCCTCTGAGTGGTCCTGTATGTTGCGCCACACAGCCTTTGGGATTACCTTTGTTCTCTGCATCTCCTGTGTTCTGGGGAAAACAGTAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCAGGTAGTAATGTCATGAAATGGTTTGGGCCTGtacagcagagactcagtgTACTTGCCTTCACTCTTGTACAGGTCATTATTTGTGTACTTTGGTTAACAATATCCCCTCCCTTTCCCTACAAAAATATGAAGTACTACAAGGAAAAGATTATATTAGAATGTAATGTAGGTTCATCTATAGGTTTCTGGGCTGTGCTGGGATATATAGGACTCCtggctattttgtgttttattttggcttTTCTGGCAAGGAAGCTACCTGATAATTTCAATGAAGCCAAATTCATTACATTCAGCATATTTATATTCTGTGCAGTTTGGATCACTTTTATTCCTGCTTATGTCAGCTCTCCTGGAAAATTCACTGTAGCTGTAGAGATATTTGCCATTTTAGCATCAAGCTTTGGTTTACTAATCTGCATATTTGTTCCAAAGTGTTATATAATCATACTAAAACCAGAGAAAAATACCAAAAAGGAAATGATGGGTAAAACACCTGCTAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111281 lncRNA downstream 77575 3735097 ~ 3735392 (-) True G93639
TU111190 lncRNA downstream 231761 3579017 ~ 3581206 (-) True G93557
TU111130 lncRNA downstream 358596 3425023 ~ 3454371 (-) True G93505
XR_004578300.1 lncRNA downstream 390809 3406145 ~ 3422158 (-) True LOC117597513
TU111001 lncRNA downstream 445772 3366721 ~ 3367195 (-) True G93380
XR_004578346.1 lncRNA upstream 129251 3944987 ~ 3946376 (-) False LOC113534402
XR_004578345.1 lncRNA upstream 129251 3944987 ~ 3946376 (-) True LOC113534402
TU111341 lncRNA upstream 257479 4073215 ~ 4073533 (-) False LOC117597611
TU111357 lncRNA upstream 339521 4155257 ~ 4155497 (-) True G93707
TU111360 lncRNA upstream 356337 4172073 ~ 4172312 (-) True G93710
XM_026927461.2 mRNA downstream 8402 3801402 ~ 3804565 (-) True LOC113534566
XM_026927704.2 mRNA downstream 19971 3787244 ~ 3792996 (-) True LOC113534753
XM_026927468.2 mRNA downstream 29486 3780380 ~ 3783481 (-) True LOC113534571
XM_026927610.2 mRNA downstream 41767 3765929 ~ 3771200 (-) True LOC113534660
XM_034305180.1 mRNA downstream 228867 3562326 ~ 3584100 (-) True gmps
XM_034305385.1 mRNA upstream 12970 3828706 ~ 3831607 (-) True LOC117597575
XM_026927703.2 mRNA upstream 21433 3837169 ~ 3840396 (-) True LOC113534751
XM_026927445.2 mRNA upstream 35328 3851064 ~ 3854230 (-) True LOC113534557
XM_034305334.1 mRNA upstream 45808 3861544 ~ 3864148 (-) True LOC113534750
XM_034305407.1 mRNA upstream 63621 3879357 ~ 3882450 (-) True LOC113534540
XR_004578380.1 other downstream 281276 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1044669 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1061798 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2044172 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 2164681 1628629 ~ 1648286 (-) False sema6dl
TU111361 other upstream 357552 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 676810 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2378339 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 3049532 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 3332208 7147944 ~ 7157488 (-) False LOC113534453

Expression Profile