RNA id: XM_026927467.2


Basic Information

Item Value
RNA id XM_026927467.2
length 3789
RNA type mRNA
GC content 0.42
exon number 10
gene id ric8b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11470088 ~ 11484458 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actctctATGACGTGACGTTTCTCAGGGAAAAGTTGAAAAGAGAGGTTTTCGGTGAGGCGGAACCAAAACATCTGCTGCTACTTGTGTAAGACTTCAGTCACTGTTCTGTTAGTTAGGGTGGTCAGTCTCCAGCCATGGATCTGAGTGGAATTCTGCTGCAGATTGAAAACGGGAACGATGAGGAAATTGAAAAGCGTTTGCAGGAATACAACGCAGAGaactgTAGGACTTTTGCCTTTGACTGCAAACAAGAGGAGGCTCGAATAAAGCTGTGTCAGGGAATACTCACAGTGCTCAGGCAGCCTGTGCGGCCCCAATGTCAGAGCACCTGTCTGGAGACCATGCGCATCCTGTCTCGTGATAAGCGTGTCCTTGGGCCTGTAGCCACCCACGACGGCATAGTCACTCTTGCCCGGCTGGCGCGCATCCCGCTGCCTGATGTCGATGTGGAGCGTCTAGAGAAAACAGAGTCAGCAGCTGAGGAGAGGGTAGTGGTGGAGGCGCTCAAGTGCCTGTGTAACGTGATGTTTAACAGCGTGGCAGCGCAGCAGGTGGGTGCAGACGTGCAGCTAGGACTGGGTTTGTGTGCCTGTCTGCGCATGGCCAGCTCCGCCAACCATGACGTGGAGCTCTTCTCTCTCCGTTTGCTCTTCCTGCTTTCGGCCCTGAGGCCAGACATCCGGAGAGGACTGCGCCAGGACTCAGATGCTGTGGAGCTGCTCACTGGTGTACTCGAGCGCACCTTGGATGTGCGCTGGGCGGGGCCGTACGAAGTCACGTGTCCTGACTCACAGGCCCCACCCATTCCTCTAGAGAGGAACGAGCGGGCAATGGAGTCACTCAAAGCTCTGTTCAACATCACCATGGCTGACTCCAATGATCAGCATAATGATCACCAACTGAGGCGTATAGCAGCCATAATGAGGCATATTCTAATGCTGAGGGTTCAGACAGAGGAGAAAACGGAGGAAGTTCACAGTCATGCCATAAATCTTCTGAGCAACCTTCCTGTGTCCTGCTTGGATGTCCTGATCGACGTGCCTGTACAGGGAGGACTTGAGGAATATGGTGGAAAGAACGTGAATGCTCTGCAGGTGCTTCTGGACTTCATGGAGAAAAGAATAGACAAGGGGTCAAATTACAAAGAAGGCCTGACTCCAGTGCTGAGCCTAATGACGGAAAGTTCCAGATACCACAGGGAGATTCGCAGATACCTCAAAGCTAAGGTTTTGCCACCTCTAAAAGATGTGAAAGTGAGACCAGAAGTGGGCAGCACCGTGCGCAACAAACTGGTCCGCCTCATGACTCACATAGACATGGGGGTGAAACAGGGGGCTGCGGAGTTCCTTTTTGTCCTCTGCAAGGAAAGCGTGGACAACCTGTTGAAGTATACTGGCTATGGCAATGCTGCAGGGCTGCTGGTGGCTCGGGGGCTGCTGGCAGGGGGCAGAGGAGACACTGAGTACTCTCCTGATGAGGATTCAGACACCGAAGAGTACAAATCAGCAAAACCATTCATTAACCCCATTACAGGCCACATAGAGGAGCCAATGCCAAACCCTATTGAGGACATGACAGAGGAACAGAAGGAATACGAAGCTCAGAAACTTGCAAACATGATCGGCGAGTTGTCAAGGCAGCAACTGATCAGGCCAATGGGAGTGAGGAAGGATGGCTCACTAGCTCCCCTAGAGGAGGCGCTACACACATGCAAGATTCCAGACAGCAGTGACTCAGACTCGGATTAAGACACGCCAAcgttactcactcactcacttgctGAATTGCCACGAAGTCAGCGCTCcatatgaaaagaaatgatATAAAACTTGTCattagtttttgtgtttgtattagaAACAATATAGTTTGTGCCTCTTTGATTTGTGAGACATGATGTGTTATATGTCAGTGCAAATTCATGACCAAGAGTGAGTCACAGTGAGGTGGTCAGATGTTGAGGTTTAATGCTCTGTGACGTTACTCTCGACCATAAATTTACAATGGACAATTAGCCATTTTATCTCAGAAACCAAATGAAACATTTGATTGCATTTCTTTTCAGTGTTGTGCCGCATTCTTGAGTTCCTCACTGATGCTCAGGGCAAGGCTAGGGAAAGAATCTGATGAAATCCACATCAGTCTCGGACCATAACGATCCCACTGTCCCACTCAGAAGCAGaaagaacattttttgttttttctgggaGATCAGTTTGGAATTTTACTTAAACTTGCTACTTTGGTAATCATTCCTTACCTTACTCTAGGTACACTGAACTGTTAACAGGCATTTACACCTAACAGGGATGGAGAAACTGTAGGACATTAGACTGTTAATATTATCTTGTAAGTGTAAATAGCACAGTTAGCATGGGCTGCTCTTGCCACTCTGGCGTAGGTCTTTATAGAAGGAGGGAGAGCAGTAACATATATCACTAAGCATATTGTAGTTATATATAAAAGACTAAAGGTAATCGTGGGGAATCACTGAATGTCTCTTATCACTAGTGTGGCTTTAAAGACAGGTACATACACACCAGGCTAGTCTTTATAATTTTAGTGTGACTTCACTGCTTCAATATTACATTTGGACAAtcttattaataattttttttgtataagatttttttttttgaagatttaAATGAATACTCGGTCCATGCGAATATTGTTTAATAGATTAGTATTATTAACTAAagtgaatttgttaataatgctAAAGAGAATGCTGGAATCACATGGAAGtaggaaaaacttttttttttaaatccataacTTGAAGTAGTggtaaaagtgtgtaaaaaaaacaaacaaaaaaaagattaactgtcactatgtacagtataatgtcTATAACACTGCTGCATAAATCTGATCTGTAGAGACATTCACTGATGTTTGAACATTtagcttttcatttctttttgaacAAAAGCCTTATTTCTCTTGAGTGGGCATCCATGAGCCTCTTTCCtttgtgctgaaaaacagaaatctgtaaaaagctgttaaaaaaaagtgtatttacATTTCTCTGGCCTTACAGTGAAATCTGTTTGTATTAAAGTCCCTCGTTCAGCTCCTGGAACATCACATTTCCAACTAAATTTAGATTTTAGGATTTTCTGGTATCTGTTTTTCTGGTAAAATTtatttcaagattttttttagattaataatAGCTCAAAATGGTTcacatttatcaaaaaaaaaaatatttagcgaaatgaagtcattttcattttagaCGGTTCACTGAATATTTATGTTTACGCATCCACTTCTTCTTAGAATTCTCAGAACACGGACTTTCTGTAAGTTTGCTTATTATTCTGTAAACTGGGGAATCATGGCTTTCTAgttgtgttataaagtgctgGGAACATAAATGCTAGAACTACAGATTCAAGTGACTCATATTTTAAAAGCTGGTTTGCCTTAGGAATcatcactgttttatttatttattataaaacagcCTGTATGGTGATAAATGTAAAGTGCATGTAAATTAAGCAAAACATTACCTATGGTTTAAGAATTGTTTCCACATTTTAATACTTTTGTTTCCTCACCATCATTAATAATTTTGCAGGCCATCTGATGGTATGTCCCCACATTCAGTCACAACATATTCCTGACACTTTTCTGGAATTCTAAGAACAGATTAGTATTTTGAATATTTGTGCGCTTTTGTAAAAATTTCCTTAGCACCTGTATGATAAATATACACAATGTGTGTAATCTATCATTTTTTATACTGTACTAAACACTGTTTAAATGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115775 lncRNA downstream 279248 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 282065 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 295915 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 295915 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 809036 10657192 ~ 10661052 (-) True G97246
TU116158 lncRNA upstream 196271 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 206539 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 206539 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 268067 11752525 ~ 11753198 (-) False plekhg7
TU116261 lncRNA upstream 386521 11870979 ~ 11871109 (-) False sspn
XM_026927786.2 mRNA downstream 16210 11449484 ~ 11453878 (-) True tmem263
XM_026927458.2 mRNA downstream 61768 11406563 ~ 11408320 (-) False mterf2
XM_034305059.1 mRNA downstream 61768 11406563 ~ 11408320 (-) True mterf2
XM_026927787.2 mRNA downstream 87497 11320829 ~ 11382591 (-) True btbd11b
XM_026927055.2 mRNA downstream 151896 11308950 ~ 11318192 (-) True mlc1
XM_034305557.1 mRNA upstream 5184 11489642 ~ 11506690 (-) False rfx4
XM_026926955.2 mRNA upstream 5184 11489642 ~ 11506688 (-) True rfx4
XM_034305558.1 mRNA upstream 5184 11489642 ~ 11506687 (-) False rfx4
XM_026927504.2 mRNA upstream 24317 11508775 ~ 11535664 (-) True polr3b
XM_026927037.2 mRNA upstream 52784 11537242 ~ 11542381 (-) True endouc
XR_004578315.1 other downstream 1175265 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1175265 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2991852 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3855992 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4312600 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 103543 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 827624 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 913229 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 936644 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1561365 13045823 ~ 13052311 (-) True G98770

Expression Profile