RNA id: XM_034305078.1


Basic Information

Item Value
RNA id XM_034305078.1
length 2920
RNA type mRNA
GC content 0.46
exon number 13
gene id trpc6b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7296120 ~ 7311380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAAAGTTCAGCCCGGAAACACAGTGTGGACCGCGGACCAACCAAAGAACAATGTGAGGAGAGACAGCCAATTTTTCGCCAAAGATCTTCTTACCTAAGAAATGAAAATCAATTTGAGGCCATGGACCTAGGACTAACTGCTTTGTTAGCTGGCTGCAAGGGAATCAATAGTATGAAATGTGGTATATCATCCAGGCaaGAGGACCAATGCTGACAGAAAAATTACCCAGAGCCAGATGCTGGCTAAGAGTCGTCGCTTGGCTATGCGCCGTCCGGCATATATGTTTAGCGCTCACTGCAACAGCCTGTCACTTGCTGAAGAGCTATTCCTTGAGGCAGCTGAGTATGGAAACATCCCTGTTGTCCGTAAAATGCTGGAGGAACTGCCTGAACTTAATATCAACTGTGTGGACTATATGGGGCAGAACGCGCTACAGCTGGCGGTGGCCAATGAGCACTTGGAGGTGACGGAGCTACTGCTGAAGAAAGACAACCTGGCCAGGATAGGTGATGCTCTGCTTCTGGCCATCAGCAAAGGCTACATCCGAATAGTGGAGGCCATATTGGCTCACCAGGCCTTTGCAGACACATCAAAGCTAACCAATAGCACCTTGCAAGCTGAAATAAATGATGACTTTTTTGCCTACGATGATGATGGCATGCGTTTTTCACAAGACATTACACCCATCATCTTGGCTTCTCACTGCCATGAATACGAAATTGTACACATCCTGTTACTGAAGGGAGCTCGCATTGAGCGGCCACATGACTACTTCTGTAAATGTAACACCTGCGTCTACCACCAGAGGCATGACTCCTTCAGTCACTCTCGTTCCCGTATCAATGCCTACAAGGGGCTGGCCAGCCCGGCCTACCTCTCGCTCTCCAGTGAAGACCCTGTGCTGACTGCGCTGGAGCTAAGCAATGAGCTGGCTGTGCTGGCCAACGTAGAAAAAGAGTTCAAGAATGATTATAAGAAGCTGTCTATGCAATGCAAAGACTTTGTCGTTGGACTTCTGGACTTGTGCCGGAACACAGAAGAGGTGGAAGCCATCTTGAATGGAGACACAGAGTTAAATGGCAACGACAAAACAGGCAGACCGAGTCTCATTCGTCTAAAACTGGCCATCAAATATGAGCTTAAAAAGTTTGTAGCTCATCCAAACTGTCAGCAGCAGCTCCTCTCCATTTGGTATGAAAATCTGTCTGGGCTCCGGCAGCAGACTACCGCTGTGAAATTGCTAGTGGTGTTCGGGGTGGCCGTTGGACTGCCAATCCTGGCTTTGCTGTACTGGATAGCGCCCTCAAGCAAGTTAGGGAAGATCATTCGTGGGCCTTTCCTCAAGTTTGTGGCCCATGCAGCTTCTTTTACCATCTTCCTTGGTCTCCTGATTATGAATGCAGCAGATCGGTTTGAGGGGACAACTCTTCTTCCAAACATGACCATCCACGACCATCCTACACAGCTGTTCCGCATGAAAACCACCCCTTTCACCTGGATGGAGATGCTGATCATTTCCTGGGTCATAGGAATGATTTGGGCTGAATGCAAGGAGATTTGGTCTCAAGGCCCTCGGGAATATCTGTTGGAACCCTGGAATCTGTTGGACTTTGGGATGCTGGCCATCTTTGTATCATCATTCATAGCAAGATTCATGGCTTTCTGGCATGCCTACACTGCACAGAGTTATGTTGATGAGCACTACACGGACCTCTCTAACATAACATTGCCCTACGAGATTGAGTATTATCGCTTAGCACGCATCTATTGGGTGCCCTCTGACCCCCAGCTGATCTCAGAGGGTCTGTATGCCATTGCTGTAGTTCTGAGCTTTTCGCGGATCGCTTACATCCTGCCAGCCAATGAGAGCTTTGGCCCCCTGCAGATCTCCCTGGGCAGGACTGTCAAAGACATCTTTAAGTTCATGGTGATCTTCATTATGGTGTTTGTGGCCTTTATGATTGGCATGTTTAACCTCTACTCCTACTACCTCGGAGCAAAGCAAAACAATGCCTTCACAACTGTTGAAGAGAGCTTTAAAACGTTGTTCTGGGCTATTTTTGGACTTTCCGAGGTCAAATCAGTTGTCATTAATAATGGACATAAATTCATCGAAAATATTGGCTATGTCCTTTATGGAGTTTACAATGTTATCATGGTTATCGTCCTCCTCAACATGCTCATCGCTATGATCAACAGCTCGTTTCAGGAAATTGAGGATGATGCAGATGTGGAGTGGAAGTTTGCACGGGCTAAGCTGTGGTTCTCCTACTTTGAGGAAGGTGGAACATTGCCTGTACCTTTTAACTTAATTCCCAGCCCCAAGTCTGTGCTCAGTCTGACTCAGAAAATCAAGCAGCTCTTGCTAACACCTCTGCACAGACACAAGGACAGCCTGAAGGAGGACACAGAGCTCAATGAACTGGGTGAACAAAAAGAATCAAATTATGCAGGATCACCTCGATCAAGTCGTTATCGGAGGATCATGAAACGATTAATCAAAAGATATATCATAAAAGCACAGATGGACAAAGAGAGTGATGAGGTAAATGAAGgGGAGCTAAAGGAGATAAAACAGGACATCTCCAGTTTGCGCTATGAGCTCTTGGAGAAGTCTAATGAGACAGAAGAATTGGCAGAGATGATCAGGACACTGGCAGAAACACTTAGCAGGCAGCACAATCACTAGTCAGTCACACACAGAGCTCCTATGTCTGAAACACTGCAAATGGCCAGCTGGTTTTAAGGGACTGCTTCAACATCGGCCTTTGAAGAACAATTGTTATATGGACTGGTGCAAGTTGGTAACTGGATGGTATATCCTGCTTTTGAAAAGGATCAGACTTAGTAAAGATGTGTACGGTGCAGAGAATCATTTCTGCAAACTCAACtactaaaataaaactttttttaatcaa

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112878 lncRNA downstream 208079 7086511 ~ 7088041 (-) True G95066
TU112884 lncRNA downstream 293486 7001648 ~ 7002634 (-) True G95072
TU112768 lncRNA downstream 626513 6664855 ~ 6669607 (-) True G94975
TU112547 lncRNA downstream 909836 6385400 ~ 6386284 (-) True G94761
TU112499 lncRNA downstream 1014861 6272238 ~ 6281259 (-) False clmpb
TU113068 lncRNA upstream 16455 7327488 ~ 7327703 (-) True G95227
TU113311 lncRNA upstream 25332 7336365 ~ 7336566 (-) True G95440
TU113322 lncRNA upstream 76699 7387732 ~ 7430763 (-) True G95449
TU113344 lncRNA upstream 109595 7420628 ~ 7421851 (-) True G95460
TU113383 lncRNA upstream 167839 7478872 ~ 7479107 (-) True G95482
XM_026927036.2 mRNA downstream 2209 7284651 ~ 7293911 (-) True cfap45
XM_026926938.2 mRNA downstream 12811 7274676 ~ 7283309 (-) False tbrg1
XM_026926937.2 mRNA downstream 12811 7274676 ~ 7283309 (-) True tbrg1
XM_034304973.1 mRNA downstream 88220 7199024 ~ 7207900 (-) False c6h19orf54
XM_026927125.2 mRNA upstream 65108 7376141 ~ 7390048 (-) False baz1b
XM_026927124.2 mRNA upstream 65108 7376141 ~ 7390048 (-) True baz1b
XM_026927001.2 mRNA upstream 80832 7391865 ~ 7397642 (-) True bcl7bb
XM_026927469.2 mRNA upstream 88259 7399292 ~ 7403117 (-) True tsen34
XM_034305523.1 mRNA upstream 104434 7415467 ~ 7418874 (-) False LOC117597612
XR_003403498.2 other downstream 138632 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 430781 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1101973 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2803381 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 3122526 4173288 ~ 4173594 (-) True G93711
XR_003403522.2 other upstream 131340 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1157268 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2957444 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2957444 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 4276968 11588001 ~ 11610964 (-) False arntl2

Expression Profile