RNA id: XM_026927578.2


Basic Information

Item Value
RNA id XM_026927578.2
length 2530
RNA type mRNA
GC content 0.47
exon number 20
gene id zgc:173742
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10586922 ~ 10642050 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACCTCATGGAATCGCAAAGCACTTCCGGGTTCTTAAAGGGGACGCGTTCAGAGCAGTTTTAGTTGTATACCCACTTTATTGATCACCTGTCTCCAGCTTGGCCATGGCTCAAGAGGATAAAGTGGAGAAAGTAAAGGTGAAGAAAGCCAAAGAGGCAGCGCTGAGTGATGACCTTTCCAGCCGAGACGCACACCTGAAAATCAAGAAGGTGAAGGCCAAATCCACTGAGAAATCCCAACGGGGACAGAAGGGCACAAAGCAGCATGAGGTCAAGAGTCCTAAAAAGGAGAGTACAGACTTTGAAATAGCTGATGATAAAAGGTTTAAGGAGGAGGCAAATGATGGTGACTTTATGCCAGAAGAGAAagggaagaaaaggaaaagaaagctgGAGTCAGTTGATGGTTTTTCTAGCTCCACTGCACTTTCTGTCAGGcctaagaagaagaaaaaagtccCGCAGGATGGAGAAGGAAGCTCTGGtccagagaaaaagaagagaaagtcGGAAGCAAAAAATAAGAAAGtaaagaaggaggaagaggagcatCCTGTCTCagcgaagaagaagaagaagacgaaggAGGAGATCGAGGCAGCCAGGGCCCTCAAGATcaagaagaaggaggaagaggagcagcagCGATGGCGTTgGTGGGAGGAGGAGAAATATGAAGATGGTATCAAGTGGAAGTTTCTAGAGCACAAGGGGCCTTATTTCCCTCCTGAGTACCAGCCGCTCCCAGACAACGTGAAGTTCTACTATGAtgGCAAGCCTGTAAAGCTGAGCTTGGCTGCAGAGGAAGTGGCTTTGTTCTTCGCTCAGATGCTGGATCATGAGTACACCACTAAAGATGTATTTCGTGACAACTTCTTCAAAGATTGGAGGAAGGAGATGACTCTGGAAGAACGGATGCTGATCAATGACCTCAATAAGTGTGACTTTGGAGAGCTGCATGCCATGCACCGGGAGAAAGTGGAGGCAAGGAAGAACATGAGCAAAGAAGACAAACTGGTTATTAAAGAGGCCAATCAGAAGATTCTGGAGGAGTATGGCTACTGTATGTTGGACCACCATAGGGAGCGCATCGGCAACTTTAAGATTGAGCCTCCAGCGCTGTTCCGAGGCAGAGGAGACCATCCTAAACAGGGCATGCTTAAGAAGAGGATCCAGCCGGAGGACGTTATCATCAACTGCAGCCGTGATTCCCGTATCCCAGAGCCCCCTGCTGGTCACAGCTGGAAGGAGGTACGACACGACAACACGGTAACCTGGTTGGCCAGCTGGACTGAGAACGTCCAGGGTTCCTGCAAATACGTCATGCTCAACGCAAACTCCAAACTCAAGGGAGAGAAGGACTGGGAGAAATACGAAGTGGCTCGCAAGCTGAAGACGTGTGTGGATGCGATCCGAGCCCAGTACCAGGAAGATCTGAAGTCCAAACAGATGGGAACACGGCAGAGAGCTGTAGCCCTCTATTTCATCGACAAGCTGGCTCTGAGAGCAGGTAATGAAAAGGAAGAGGGGGAGACTGCAGACACAGTGGGTTGCTGCTCTCTGCGTGTCGAGCACATTACCTTACACGACGCACTCGATGGAGAGAAATATGTGGTGGAGTTTGACTTCCTTGGTAAAGATTGCATCCGTTACTACAACAAGGTTCCTGTCTCGAAAAGGGTCTTCAAAAACCTCAAGCTTTTTATGCAGAACAAGCAAGAAGGAGACGACCTGTTTGATCGATTAAATACTGCGATGTTGAATAAGCATCTGAGTTCTCTGATGCCTGGTCTTACAGCCAAGGTTTTTAGGACATACAACGCCTCCATGACACTGCAGCAGCAGCTCAAAGAGCTCAGCAATCCTTCAGATAACCAGGTGGAGAAGCTGCTGTCCTATAACAGAGCGAACCGTGCGGTTGCAGTTCTCTGTAACCATCAGCGGGCGCCGCCAAAGACCTTCGAGCAGTCCATGGCCAACCTGCAGGCTAAGATTGAGAGTAGGAAAGAGCAGCTAGCGCTTGCTAAAAAGGAGCTGAAGCAGGCCAAGAAGGAAGCCAAAGGGAGCTCAGACAGCAAACTACTGGCtgtggtagagaagaagaagaaggcagTGCAGCGCTGTGAAgagcagctgctcaggatggaGGTTCAGGCTACAGACCGAGAAGAGAACAAGCAGATAGCCCTCGGCACCTCCAAACTAAACTATCTGGACCCACGCATTAGTGTGGCCTGGTGCAAGAACATGGAGGTGTCATTGGATAAAATTTATAACAAGACTCAGAGGGATAAGTTTGCCTGGGCCATTGACATGACGGAGCTAGACTTTGTGTTTTAATCCCACACCTTGTATTTACAGTTCCAGTTAAATCTTCACGTTTTTTTATACAAGCACTTAGACGCACATTTTAGCATAAATTCTTACAAGctgtttttaaatgctgttggtttattgtttttttttatataaattcagCAGCTGAATTGTTTTTTTACTATCTGTTTCAATAAATAGTTGTATGTTTCCTA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115345 lncRNA downstream 57412 10527110 ~ 10529510 (-) False si:dkey-246g23.2
TU115368 lncRNA downstream 65925 10520795 ~ 10520997 (-) True G97225
TU115367 lncRNA downstream 67617 10519097 ~ 10519305 (-) True G97224
TU115347 lncRNA downstream 107635 10479067 ~ 10479287 (-) True G97204
TU115309 lncRNA downstream 215597 10370748 ~ 10371325 (-) True G97173
TU115392 lncRNA upstream 15142 10657192 ~ 10661052 (-) True G97246
TU115763 lncRNA upstream 530637 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA upstream 531271 11173321 ~ 11174173 (-) False pdf
TU115769 lncRNA upstream 545445 11187495 ~ 11188023 (-) True G97601
TU115775 lncRNA upstream 548591 11190641 ~ 11190840 (-) True G97607
XM_026927354.2 mRNA downstream 5020 10528177 ~ 10581902 (-) True si:dkey-246g23.2
XM_026927352.2 mRNA downstream 5020 10530746 ~ 10581902 (-) False si:dkey-246g23.2
XM_026927353.2 mRNA downstream 5748 10530746 ~ 10581174 (-) False si:dkey-246g23.2
XM_026927066.2 mRNA downstream 81799 10477186 ~ 10505123 (-) True kcng4a
XM_034305362.1 mRNA downstream 133764 10448986 ~ 10453158 (-) True si:dkey-246g23.4
XM_034305493.1 mRNA upstream 64821 10706871 ~ 11042272 (-) True cdh13
XM_026927545.2 mRNA upstream 527752 11169802 ~ 11172027 (-) True si:dkey-238o13.4
XM_026927490.2 mRNA upstream 531300 11173350 ~ 11179608 (-) False pdf
XM_026927492.2 mRNA upstream 531300 11173350 ~ 11179578 (-) False pdf
XM_034305384.1 mRNA upstream 531300 11173350 ~ 11179578 (-) True pdf
XR_004578315.1 other downstream 292099 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 292099 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2108686 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2972826 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 3429434 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 945951 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1670032 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1755637 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1779052 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 2403773 13045823 ~ 13052311 (-) True G98770

Expression Profile