RNA id: XM_026927595.2


Basic Information

Item Value
RNA id XM_026927595.2
length 4612
RNA type mRNA
GC content 0.41
exon number 13
gene id LOC113534648
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 2019857 ~ 2033455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgaaagtgaaagtgaaagtggagAGGTTGTTTTGTTCCTGTGCCGCTGATCAGAACACACAAAGTCTGCATTTATACTTGAAGAAAATACCTTTAAGAAAACACACCACAGACCCCTGAAAATGAGTACCCCTGATGATGGTAAAGAGGAGAGATCTCAGAAAGAAAGATCTGACTCGCCTGCACCCAGCGCTGTCTCTATGAAGAGTGACCGGTCAATGGGTGAGCCAATAGTGTTtcaacagacagagaaagaaagTCTTATTGATCAAAAGAGCTCGGAGTCACCTGAAACCAGCTCTGTGTCTATGAAGAGTGACCGCTCAATGGGTGAGCCAATTGtgtttcagagagagaaagaaagAGACAAGCGCGGCATATCAAATCCTTCCATGGTGCTGGATGCTGATTCCCAGGTCCAGCATCTGAGCCAAGAATATCTAGCGAGctatgatggagtgatggaagACAAGGAGCATCAGGGCAGTACAAGAGAACTGGGTCCTGTGTTGAAAAGTTTCAAATCCAAACTGCAGAAGAAATTTCAGATGATTAATGAGGGAATCTCAATACATGGAAACTCAAAACTTCTAAATGAGGTTTACACAGAACTGTGTATCACATCAGATTGTGGGTGTGGACATGTCAATGATGAACATGAGGTCAGACATATTGAACAGGCATGCAGGAGTCTAATAACAGAGGAGTCCATCAACTGTAATGACATATTTAAACCCTTACCTGGAGATGAGAATCCCATCAGAACTGTGCTAACAGAAGGCATTGCTGGAATTGGGAAAACAGTGTCTGTGCAGAGGTTtgttctggactgggctgaaggaaaagcaaatcaggattTGGACTTCATTTTTCCCTTTAACTTTAGGGAGTTCAATTTTTTGAAGAGAGAAAATCTCAGTTTGTTGGAGCTTCTCCATTGTTTTTTCCCAGAAACCAAAGAACTTAAAACAGACTATCATCGCTACAGAATCATGTTCATCTTTGATGGACTGGATGAGTGTCGTTTTTCTCTTGATTTCCTAAACAGCAAAAGGTTGGCTGATCTAACAGAGTCAGCTTCAGTGGATGTACTGTTAACAAATCTTATTAACAGGAATCTGCTTCCGTCTGCATTCCTCTGGATAACATCTCGGCCAGCAGCGTCCAGTCAGATTCCTCCTGCTTATATTGACAGAGTAACAGAGATCCGAGGGTTCAGTGACCCTCAGAAAGATGAGTACTTCAGAAAAAGAATCAGTGATCAAACCCTAGctaataaaatcatcacacacctgAAGTCGTCGCGAAGTCTTTACATTATGTGCCACATGCCAGTCTTCTGTTGGATTGCAGCGACTGTTCTCGAGGGAATGTTCAGTGAAGCAGAAACTGGAGAGGTCCCCAAGAccctgactcaaatgttcacacatttCCTGATCTTGCAGATCAAACATCGATCCcaaaagtacaaaaaacatgaaatggaTCCTGGACAGATTGCAGATGTTGTACTAAAACTGGGAAAGCTGGCATTCcagcagctggagaaaggaaacctgatcttttACGAGGAGGACATCATAGAGTGTGGCATTGAGGTCCGAGAGGCCACGGTGTACTCAGGAGTTTGCACTCAGATCTTTATCGAGGAAGTCACTTCACATCTGGGGAAGGTGTACAGCTTTGtgcatctgagtgttcaggagcaTCTTGCTGCTGTGTATGCATTTCTCTCATGTATCAATGGAAATCTCTCAAAACAACAACCTGAAATCTTCGGCCTCTCCAGCAAGGCAACACTGTTAGACCTTCTAAAGGCAGCAGtagacaaggccttacagagtaagaatggacacctggaccttttCCTCCGCTTCCTTATGGGTCTCTCACTGCAGTCCAATTCACTTCTCTTACAAGACCTACTGACAGAGACAGGGCGCAGCTCTGTGAGCAAAAATGCTGCTGACACAAACAAGGAAATAACCatgtacatcaaggagaagattaGAAAGAATCCATCAACCTgcaaatccatcaatctgttccattGTCTGAATGAGCTGAATGACCAGTCTCTGGTACAGGAAGTTCAAACCTTTTTGAGTAAAACAGAAAATCATTGCCTCCATAGAGTCACACTTTCTCCAGTTCAGTGGTCAGCTGTGGTTTTCTTGTTGCTGAACTCAGAAAAGGACCTTGAAGAGTTTAACCTACAGAAATATTCAGCATCAGAGTATTGTTTGATAAACATGTGTCCAGTTATCAAAGCATCCAGAAAAGCTCTGCTGTGTGGTAGTAATCTTACAAAGAATATTTGTAAAAGTCTGGGAAAATGTCTCAGCTCAGTCTCTTCATGTCTGAGAGAGCTGGACCTGAGTGATAATAAACTACAGGATTCGGGAGTCAAACTGCTTTCTGCTGGGTTGGAGagtccacactgtaaactggagatcTTAAGaCTTGGTGACTGTGATCTCACAGAGAAAAGCTGTGCAGTTCTTGCTTCAGTTCTTACCTCTAAGTCGACACATCTGACAGAGCTGCGTCTCAGCcgcaataaactgcaggattcaggagtgaagcggCTCTCTGAGGCCCTGCAGAGCCCACGCTGTAAACTACAGACACTGAGGCTGAATACCTGCAGCATTACGGAGGAAGGCTTTACTGCTTTGATTTCAGCTCTGAGGTCGAACCCTTCTCACCTGAGAGCGCTGGATGTGGGGAGAAATAAAGCAGGACAGACGGGAGTCAACCTGCTCTCTGATCTCTTACAGGAACAGAGCTGTAAACTGGAGAAATTAAAATTGTTTGACTGTGGCATTACACAGGAAGGTGGCACTCATCTGATTTCAGCTCTGATCTCAAACCCCTCTCACCTCAGAGAACTGGATCTGGGCTGGAATAAAATAGGAGACCCGGGAATAAAATTAATCTCTGATTTCCTAAAGAATAAACTCTGTAAACTGGAGATATTAAAGTTGCATGACTGTAACATTACAGAAGAAGGCTGTGTTGCTCTTACTGAAGCTCTGAGGTTAAATTCACACCTGAGAGAGCTCGATCTGAGCGCTAATAATGTAGGAGAAGagggagtgaagctgctctctgatatACAGGAGGATGAAAAGTGCACACTGGAGAAGTTGGActtgtcacgttgCTGAGAAACAGCAAGGAAGCGTAAAcgtctctgtcctgaagatgtcagaaaacgtaaagttacagctttacctctgtaaatatatgtattctttttattcatatGGAAACATGATATGATGAATCATCATGAGTGTATAGCTACcatattcgtgtgtgtgtgtgtgtgtgtgtgagacatagACTGTATTCtgtaagtgtgtgcatgtgtgtcttgACTCATAGGCCTGTACTACAATCTTAGCATCAATTCCTATTtccacatgtattttttttttttaaagatggagTCAAACTCACACTATTTTGATTCAAAATCTGCAgcatctgttttaaaaaaagaaaacaaacattatatatatatacataaaggaTCACACAGCAAAGAAGAGCTGAAAAACAATGCAAGTTTTGTGTTTCACTGTAGGAATAATGTACAGACGTTAACATGGACATAAAGTTGTTTTGTAATATACTGGGAAAATAGAAACATCACATGATTAATTATAAAGCAAGTGAATTGTCAGTAAAAGCATTTCTGAAGCATTTAACTCGTCTGTATTCAGCAGTATGAGCAGCTTTTTTATGGAAGAACTTCAATTTAACTAGGTTTTAAATCCACATTTCTATCCATCACTGACTGTTGAtgcttttcttattatttgtaTTGAGTTGCTGTGGTTTCCATCacctacactgtgtgtttattgggaGTCTGTCTGTAGAAGGCAGAAAGTTCTGGATGTGAAAAGggaaaattttatttaagtttacttttagcattttattgtttgCACTTTAGATGTACTTTGAACAGCATTACTCTGAATGAAACTatattaatctgaatttgattaCACCTGCGAAAGAAATGACACAACGTCTCATCAAATCATTTCTGTGCACAGTCAGACATGCCTCCTTGCCAACCAATCAGCATTTGCCAGGCATAGCATCAAAGACACGCTAAACACGTAGTTAGCTTGTGGATGTTAGTTAGAAACAGAaagtctctgtgtctctgcatgCCATATTTACCCATGATCCCCCTCTCTGTCTGCCTTGAAGGGGAGTATTCACATCTCAGCTCCAGGGCATCACTTTACAGTCTGACAGATTAGCTTTGTGACGAAAACCATTTATACTCACTGTGGTTGTAATTTATTTCTAAACTTTCTTTCAtgatttttgtataacagtTCTGATAAACGAGTCGTTTTTGACTCAGCCATTGTTGTTGTAGTGGAAGTAAAGTTACCCTGTGAAGAACACCTCTGTCAGGAAATATGAAAAGATCccaatatttctgttttacacTCTTCAGCAAATGTATAATGTCTTTCCTAACTCTGATCTGTGACATGATGTTTTCAGTGCTagtaaataacaataaaatatgtaagAATGTTCTTTATAAAGCAAACATAAATTAAAGGATTTCATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110246 lncRNA downstream 20555 1996680 ~ 1999302 (-) False LOC113534649
TU110241 lncRNA downstream 23236 1995031 ~ 1996621 (-) False LOC113534649
TU110078 lncRNA downstream 139284 1877009 ~ 1880573 (-) False LOC117597531
XR_004578309.1 lncRNA downstream 139290 1876965 ~ 1880567 (-) True LOC117597531
TU110073 lncRNA downstream 157443 1861949 ~ 1862414 (-) True G92592
TU110234 lncRNA upstream 2486 2035941 ~ 2130790 (-) False fam214a
TU110272 lncRNA upstream 63131 2096586 ~ 2098273 (-) False onecut1
XR_004578342.1 lncRNA upstream 138419 2171874 ~ 2173454 (-) True LOC117597579
TU110295 lncRNA upstream 190729 2224184 ~ 2224457 (-) True G92763
XR_004578340.1 lncRNA upstream 206983 2240438 ~ 2260923 (-) True LOC117597578
XM_034305080.1 mRNA downstream 4892 1996666 ~ 2014965 (-) True LOC113534649
XM_026926935.2 mRNA downstream 27370 1987373 ~ 1992487 (-) True arpp19a
XM_034305210.1 mRNA downstream 35524 1906518 ~ 1984333 (-) True myo5aa
XM_034305329.1 mRNA downstream 115446 1881831 ~ 1904411 (-) True gnb5b
XM_026926963.2 mRNA downstream 143812 1864583 ~ 1876045 (-) True bcl2l10
XM_034304997.1 mRNA upstream 2863 2036318 ~ 2086238 (-) True fam214a
XM_026927796.2 mRNA upstream 58279 2091734 ~ 2109935 (-) True onecut1
XM_026927364.2 mRNA upstream 566086 2599541 ~ 2623825 (-) True rab27a
XM_034305220.1 mRNA upstream 606409 2639864 ~ 2656507 (-) False ccpg1
XM_034305216.1 mRNA upstream 606409 2639864 ~ 2656506 (-) False ccpg1
TU109993 other downstream 251062 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 371571 1628629 ~ 1648286 (-) False sema6dl
TU109967 other downstream 375640 1627801 ~ 1644217 (-) False sema6dl
TU109955 other downstream 488795 1515738 ~ 1531062 (-) False LOC113525562
TU109770 other downstream 793555 1222721 ~ 1226302 (-) True c6h15orf48
TU110620 other upstream 715933 2749388 ~ 2751169 (-) True G93046
TU110621 other upstream 726157 2759612 ~ 2768298 (-) True G93047
XR_004578380.1 other upstream 1395573 3429028 ~ 3531691 (-) False kcnab1a
TU111361 other upstream 2139833 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 2459091 4492546 ~ 4492739 (-) True LOC117597618

Expression Profile