RNA id: XM_026927684.2


Basic Information

Item Value
RNA id XM_026927684.2
length 2592
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113534728
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4499062 ~ 4506999 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGGCTAACCTCGGGTTACCACCGCAGACCAATGGGCAGGTGGAGAGGGCCAATCAGGAGGACCTTTTGTGCACAGAACCAGGAGGATGAGGCTCAGTTGCTGCCTTGGGCCAACATGgcaaagggagaaaattgccGTATTCTGGAAAACCCAGCATATCCCTTACTGGCTAAAGATGGAGATGTGATAATTGGAGCTGTCTTTTCAATACATGATGGTACACAAATGCAGTCACTGCCATATACTGAAAAACCTCATCCTTTAATCTGCATTAGatttaatctCAGAGAATTCCGACTTGCTCAGACCATCACATTCGCAATTGAGGAAATCAACAGAAGCAGCAGCTTGCTCCCAAATATCTCAATTGGTTACAGAATTTATGACAATTGTGACTCAAGATTGTTATCTATGAAGGCAGCCGTGGCTTTGATGAATGGTATGGACATAACAGCAGATGATACCTGCTCTGGACAAGCAGTAGTACAAGCCATCATAGGGGAGTCAGAGTCTACTCCTACTATAGCACTCACAAGAACTACAGGACCTTTTAAGATCCCAGTGATAAGTCATTCTGCCACATGTGACTGTTTGAGCAACAGAAAAGAGTACCCCTCTTTTTTCAGGACTACTACGAGTGACTACTACCAATGTAGAGCATTGGCATATTTGGTGAAGCACTTTGGCTGGTCTTGGGTGGGAGCTGTGAACAGTGATAATGACTATGGCAACAATGGAATGGCCATTTTTCTGAATGCAGCCAGAGAGGAGGGAATATGTGTTGAGTACTCAGAGAAGTTTGACCGGTCAGATACTGCCAAAATCATGAAAGTGGTCAATATTATTAAGGAAGGCACAGCGAAAGTAATTATCTTAGTTCTCGCCCAAATTGACATGAACATTCTAATAGACCACCTTATCCTAAAGAATGTCACTGGCTACCAGATTATTGGTGGTGAAGGATGGATTACTGCTGTCAATCTAGTAACACCAGCAAGTTACAATATTTTTGCTGGAGCCATTGGTTTTGATGTGGGAAAATTGAACATTAATAGTTTTGCTGACTATGTGGTAAATGAATTTTGGCAAACAGTGTATCCTTGCCTGCATACAGAGGGAAACATTTCTCAAACTGAAAACAACTGCAAGAAATATGAAGATATGATTCcatttgaaaaatataatgaagACATATCAGAATTGAGATATGCAAAAAACATCTACAATGCAGTTTATGCTGTGGCGCAGTCTCTACACAGCCTGTGGAGATGCACAGAAAATCAGAGCTgtgtgaaagacaaaaaaacacaaccatgGCAGGTTGTTGAGTCTCTAAAAAAGGTAAATTTTACCACCAAATTGGGAGAACAGGTGTGGTTTGACAGCACTGGGGCAACGGCGGCAAAATACGATGTGGTGAACTGGCAACGGGGGTTCAATGGAGAAGTGCAGTTTAAGGTTGTGGGCTATTACGATGCCTCTCTGCCAACTGGACAACAATTTGTCCTAAATGATGAAGATATAATCTGGGCTGGAGAGACAAGAGAGAAGCCAAAgtctgtgtgcagtgagagATGTCCTCCAGGCACCAGAAAAGCTGTACAGAAAGGAAGGCATGTCTGCTGCTACGACTGTATTCCATGTGCAGAGGGTGAGATCAGTAACCAGACAGATTCAAATAACTGTGAGCAGTGTCCAGGAGAATATTGGTCTAATGCTGACAGAGATAAATGTATGTTAAAGGTCATAGAGTTTCTTTCATTTACAGAGGTTATGGGGATAATACtagtacttttttctttgtttggagCTACATTAACTGTGTTAGtagctattttatttctaatagaAAAGGACACTCCCATTGTTAAAGCCAATAACTCAGAGTTGAGCTTCCTGCTACTGTTCTCCCTGactctgtgtttcctctgttcaCTTACTTTCATTGGACGACCCTCTGAGTGGTCCTGTATGCTGCGTCACCCAGCGTTTGGGATCACGTTTGTCCTCTGCATCTCCTGTCTGCTGGGGAAAACAATAGTGGTGTTAATGGCCTTCAGGTCTACAATTCCAAGcagtaatgtaatgaaatggtTTGGACCTTTACAGCAAAGACTCACTGTTCTTGCTTTCACTTCCATACAGGTTcttatttgtgtgctttggttaacagtttctcCTCCTTTCCCCTACAAGAACATGAACTACTACAAGGAAAAGATCATATTAGAATGTAACTTGGGCTCAGCTATAGGTTTTTGGGCTGTGCTGGGTTATATAGGATTTCTTGCTTTCTTGTGccttgttttgtcttttctaGCTAGAAAGCTGCCAGATAATTTTAATGAAGCTAAATTCATCACATTCAGCATACTCATATTCTGTGCTGTGTGGATAACTTTTATTCCAGCTTATGTTAGCTGCCCTGGAAAATTTACTGTAGCTGTGGAGATATTTGCTATTTTGGCCTCCAGTTTTGCTCTActattctgtatatttacacctaaatgttatattattctgtttaaacctgaactaaacacaaagaaaaatatgatgGGTAAAATGGCATCCAAATCACTAGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578376.1 lncRNA downstream 267231 4231460 ~ 4231831 (-) True LOC117597614
TU111372 lncRNA downstream 281220 4217578 ~ 4217842 (-) False LOC113534736
TU111366 lncRNA downstream 315069 4183755 ~ 4183993 (-) True G93716
TU111360 lncRNA downstream 326750 4172073 ~ 4172312 (-) True G93710
TU111357 lncRNA downstream 343565 4155257 ~ 4155497 (-) True G93707
TU111413 lncRNA upstream 39440 4546439 ~ 4546705 (-) True G93753
TU111561 lncRNA upstream 276926 4783925 ~ 4785131 (-) True G93896
TU111595 lncRNA upstream 386587 4893586 ~ 4894074 (-) True G93926
XR_004578349.1 lncRNA upstream 459635 4966634 ~ 4971603 (-) True LOC117597587
TU111675 lncRNA upstream 500426 5007425 ~ 5011433 (-) True G93988
XM_034305346.1 mRNA downstream 19455 4471011 ~ 4479607 (-) True LOC113534730
XM_034305161.1 mRNA downstream 42530 4453199 ~ 4456532 (-) True LOC113534606
XM_026927687.1 mRNA downstream 47573 4448274 ~ 4451489 (-) True LOC113534731
XM_026927650.1 mRNA downstream 75268 4420449 ~ 4423794 (-) True LOC113534695
XM_026927602.1 mRNA downstream 84373 4411393 ~ 4414689 (-) True LOC113534655
XM_026927531.1 mRNA upstream 8184 4515183 ~ 4518934 (-) True LOC113534611
XM_026927682.2 mRNA upstream 20209 4527208 ~ 4533871 (-) True LOC113534726
XM_034305347.1 mRNA upstream 30082 4537081 ~ 4541768 (-) True LOC113534725
XM_034305349.1 mRNA upstream 45140 4552139 ~ 4557113 (-) True LOC113534724
XM_034305350.1 mRNA upstream 51098 4558097 ~ 4562322 (-) True LOC113534723
XR_004578382.1 other downstream 6323 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 325468 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 967371 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1730764 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1747893 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 1687076 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2358269 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2640945 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 2935374 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 3961302 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile