RNA id: XM_026927703.2


Basic Information

Item Value
RNA id XM_026927703.2
length 2481
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC113534751
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3837169 ~ 3840396 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGCTAGGCCTGCCCAATCCTCCTCTACTCAGCAAAGATGGTGATGTAATGATTGGTGGTATCTTTTCCTTCCATGTCAAATGGGACCAGACAACACATGTCTTTACATCTGGGCCCTGGCAACCAAACTGCAGAAGTTTAAGCCTCCGTGAATttcaaaatgcacaaacaatGTTATTTGCCATTGAGGAAATCAACAACAGAACTGATATTCTTCCTGGGATCAAATTGGGTTATAAAATCTATGATTCTTGTGGCTCAGTAGAAATAACCACAAGAGCATCCTTGTCCTTAGTTAATGGCAATGGAGAAAATACATCTGTAATGTCTTGCTCCAAACCTGAAACAGTTCAAGCAATCATAGGACAAACAGCATCTAGCTCCACTATTGCCATGTCTGTTACTGTGGGACCTTTACACATACCTGTGGTCAGTCATTTTGCAACATGTGCATGCCTAAGTGACAGGAAGAAATACCCATCTTTCTTTAGAACTGTTCCTAGTGATTACTACCAGAGCAGAGCTTTGGCTAAGTTGGTCAGGCATTTTGGTTGGACATGGGTAGGGACCCTATGCAGTGATAATGACTATGGGAACAATGGCATAAATGAATTCATCATTGCAGCCAAAGAAGAGGGAATCTGTGTTGAGTATTCCAAAGCATTCTTTAGAACAGACTCCAGAGAAAAAATTCTGAAAGTAGTTGAGATTATCAAGGCTTCAACCTCCAAAGTTATTGTAGCTTTTGTCTCATATTCTGACCTTGGGATTCTTCTAAAGGAAATGGCCTTACAGAACTTGACAGGCTTTCAGTGGATTGGAAGTGAGTCCTGGATCTCTGATATAAACCCAGCTAATGCTCAATGGCAACATCTTCTGAAAGGATCCATGGGTTTCGCTATGCCAAAAGCTCAAATTAAGGGCCTAGAGGAATTTCTGACCATGCTTAATCCAGCCTCTGATGCAACAATTTTCAAAGAGTTGTGGGAGACAATATTTGAATGTAAGCTTTCCACACAAGAAAATGTTGAGATAAAACAAATGTGCAAAGGCAATGAAAGTCTCAGACAAGTTCAAAACCTTTATACAGATGTTTCAGAGCTACGAGTTGCAAATAATGTTTATAAGGCTGTTTATGCTGTGGCATATGCCCTGCATAACACATATGGTTGTGGACAAAAAGATCTTATTGCATGTGCAAACATCACTAATAAACAATGGCAGGTAGTGAATGAGTTGAAGAAAGTCCATTTTACTAGTACAAATGGAGAGGTTGTATACTTTGATGAAAATGGAGACCCTGCAGCGAGGTATGAGCTGCTGAACTGGCAACAAGGAAAAGACAGTAAAATAGTATTTGTTAAAGTGGGCTTCTATGATGGCTCTTTGCAAACACACCATCTGTCATTTAACAACATCAGTATAGCCTGGGCCCACAGTAAACCACAGGTGCCAGTCTCTGTGTGCAGTCAGAGTTGTCCCCCAGGCACCAGAAAGGCTGTGCAGAAAGGAAGGCCAATCTGTTGCTTTGACTGTATACCATGTGCAGAGGGGGAAATCAGTTATATAACAGATTCTATAACTTGCATCAAGTGCCCACCTGAACTGTGGTCTAATGAAAAGAAAGATACCTGTGTCTCAAAGCTTGTGGAATTCCTGTCATTTGACGAGATAATGGGAATCATTcttgtattattttctttgctaGGAGTATCTTTCACCATCTGCATtgcagtaattttctttaaatacaaGGAAACCCCAATTGTTAAGGCAAATAATTCTGAACTAAGCTTCTTGTTGCtcttctcactctttctctgtttcctcTGTTCACTTACATTTATTGGTCAGCCCTCTGAGTGGTCCTGTATGTTGCGCCACACAGCATTTGGGATCACCTTTGTCCTCTGCATCTCCTGTGTTCTGGGGAAAACAGTAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCAGGTAGTAATGTCATGAAATGGTTTGGGCCTTTACAGCAAAGGCTCAGTGTACTTGCTTTCACTCTTATTCAAGTCATTATTTGTATACTGTGGTTAACACTATCCCCTCCCTTTCCCTACAAAAATATGAAGTATTACAAGGAAAAGATCATATTAGAATGTAATGTAGGCTCAGCTATAGGTTTCTGGGCTGTGCTGGGTTATATCGGACTCCTGGCTCTTCTATGTTTTATTTTGGCTTTTCTGGCCCGCAAGCTACCTGACAATTTCAATGAAGCCAAATTCATCACATTTAGCATGCTCATATTCTGCGCAGTTTGGATCACCTTTATTCCTGCTTATGTCAGCTCTCCTGGAAAATTCACTGTATCTGTAGAGATATTTGCCATTTTAGCATCAAGCTTTGGTTTACTATTCTGCATATTTGTTCCAAAGTGTTATATAATCATGCTGAAACCAGAGAAGAACACTAAAAAGGAAATGATGGGTAAAGCACTTGCTAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111281 lncRNA downstream 101777 3735097 ~ 3735392 (-) True G93639
TU111190 lncRNA downstream 255963 3579017 ~ 3581206 (-) True G93557
TU111130 lncRNA downstream 382798 3425023 ~ 3454371 (-) True G93505
XR_004578300.1 lncRNA downstream 415011 3406145 ~ 3422158 (-) True LOC117597513
TU111001 lncRNA downstream 469974 3366721 ~ 3367195 (-) True G93380
XR_004578346.1 lncRNA upstream 104591 3944987 ~ 3946376 (-) False LOC113534402
XR_004578345.1 lncRNA upstream 104591 3944987 ~ 3946376 (-) True LOC113534402
TU111341 lncRNA upstream 232819 4073215 ~ 4073533 (-) False LOC117597611
TU111357 lncRNA upstream 314861 4155257 ~ 4155497 (-) True G93707
TU111360 lncRNA upstream 331677 4172073 ~ 4172312 (-) True G93710
XM_034305385.1 mRNA downstream 5562 3828706 ~ 3831607 (-) True LOC117597575
XM_026927464.2 mRNA downstream 21433 3812967 ~ 3815736 (-) True LOC113534568
XM_026927461.2 mRNA downstream 32604 3801402 ~ 3804565 (-) True LOC113534566
XM_026927704.2 mRNA downstream 44173 3787244 ~ 3792996 (-) True LOC113534753
XM_026927468.2 mRNA downstream 53688 3780380 ~ 3783481 (-) True LOC113534571
XM_026927445.2 mRNA upstream 10668 3851064 ~ 3854230 (-) True LOC113534557
XM_034305334.1 mRNA upstream 21148 3861544 ~ 3864148 (-) True LOC113534750
XM_034305407.1 mRNA upstream 38961 3879357 ~ 3882450 (-) True LOC113534540
XM_026927701.2 mRNA upstream 43232 3883628 ~ 3891924 (-) True LOC113534749
XM_026927436.2 mRNA upstream 59515 3899911 ~ 3905480 (-) True LOC113534546
XR_004578380.1 other downstream 305478 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1068871 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1086000 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2068374 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 2188883 1628629 ~ 1648286 (-) False sema6dl
TU111361 other upstream 332892 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 652150 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2353679 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 3024872 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 3307548 7147944 ~ 7157488 (-) False LOC113534453

Expression Profile