RNA id: XM_026927705.2


Basic Information

Item Value
RNA id XM_026927705.2
length 3712
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC113534754
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6031416 ~ 6042803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTCGCGCTGGATTGTTATACATATTCATGACTGCAGCAGGAGTTCACATCCAATAGCAGGCGACCTGAGATGAATATTCAACAGATCCGTCGACGGAGAGCGTCGGCTTCAGTGTGCATCTGGATGAGAGGCGTGAGAGCGGCGTTAAGTGCGAGCTCACGTGGAGAAACGCTGCTGAAACTAAACAGCACGCTTTGGGTGGTCGGTTTAGAGGAGGAGAAATGCGAGGATAAGGAGCGGAATGCGCTTTTCTGGCGTTTTGCTGAGGCGTTTCACACGAGCCGGCTGATTTACAGCGTTCTGTTGAGTGAGGAAAGCACTCCCGTCTCCTCATCCTCATGCACCGCGGAATTTCTCTCCACATGACAAGCCGCAGTAAGGGGCTCCTGGAGGACATCGTGTCCAGCCTGTGGGAGCTGGAGAGCGCCAGACAGAGGCAGGAGAGACTCGTGCTGGGCGTCCTGGCAGCCGGAGACACCGAGAAGGAGCACGAGACTCTGAAATGGCAGCAGAAGCAGCTCCTGGATGCCCCTGGTGGTCTGATGGTGGTACTGCAGCAGCAGCTCAGCGAGTTGACGGTGGACTCTAACACAGAAGACAACCTGGACAGTGTGTCTAGCTCAGGTTTTTACGAGCAGAGTGAGATTCAGTCCCCTTTAAGACACTCAAGATCTTCTCCCAGTCTTTCTTTCTACAGCCGCAGAGGCAGACCAGTGGAAGATGCCTACATGCTGGACTGGGAGGGTCAGAGGGCACGACCCTTGCGTGCTTTTCTGCCTCGTTCATTCTCTGCCCCCTACCCCCCTTTAGAGGGCATTGCAGAAGGAATTGAGGATGCCGAGGATGATGACAATGGAACTCTGTGGTCAAAAGGCCAAACTCCAAATGGAGAGGACGTGAATGGAACTGATATGGGTACCATTACGAATTTAAATGAGGATGGTGGCCACACTGGGATCCATTGTGATTATCAAGGTCCCACTGTGGAGGTGGATGAGGGCCCCACAGCAGAGGACATTCAGCAAGCAATGCGTGTGGAGACCTATATTTTGGGTCTTCTACAACGCTATTGCCTCAACCAAACTCCAACCTCTACAGAAGTCCTCAGTTCTACTCCTGATTGCTGGCAAGAACTGCATGCTTTCCCCCCCAACTACTGTGAACAACCTGAAAATTCAGAGTGGCAGCAATGGGAACTCATCAATGATGAAAAAGCATCGCAAGATAGATACTATCTGGGAAGTGAGGCTAATCGATTCTCACAGGCTTGTAAAGATCCAGGCTCCTCCATAGAGTCATCCACTATCATTGCTGATATAGAGTCACATTGTCTTCATCATCCCTGTGTTTCTCCATCTTTAACTGAATCTCCCAAACAAGACTGGGAGCCTACATCTCTGGAactggcacatcaactgccctTAGCCAGACTGTATCAGGAGGAAAGCTGGTCATCAGTTAGGCAGAGGCATGTAAAGACAACCAGCCAGTCACTATCAGAAGGAAACTTTCAATCCCAAGGTTTTACCACCAAACCAGAGCATGGATACCATTCACTGGGGCGGGATATGGATATGCACTGCTTCAATGAAGATTATATGTCCAGTCAGAGACTCTGGAGCTCCACGGCAGACCTCAATCAAGAAGAGAAGGTGACGTTGCTCAGAGCAGAGGAACGACTGTTGAGAGACACACACCTACCATTTCACATCAGCCCACAGTCTTGTACTAAGTACACTGAGCAGGGCCATCACATTGGGAATGAGACGAATACTAGAGGAACTCAAGGAGATGGATCTGACTCCAGTCTGAGTGAGACATGCTCTCCAGGGTCCAGCTCAAGGTCAAGTGACTCAGATGAAAGTGGGGGCCTTGTCTGGCCACAGCAAGTGCCCCCATGTGTGCCTTCTTTCTCCCAGAATACACCTACTGCCATGGTCAGGATCAAAGCCTCGCATGCACTAAAGAGGAAGATCCTGCGTTTCCGGTCAGGCTCGCTAAAGGTCATGACCACAGTCTAGTCTTGGATGTGGCATTTGAGATTAATTTGGTATATGCTGTGCTTCCAGCCTTTGATGGTGTATGGTGTTAGTAAGTGGAATCCATGCACCCAAAGTTGGATTCAATATATGTCCAAATTCAGTATGACCTAGTTGAATGTTATGGAATCCTCTGTACAATTTACAAAGCTggctatgtatgtatgtatgtatgtatacacctTTGGTTCTCTGGGTGAGAGATTTGAATACTGTTCTCAACATGCTTTTAACCTTTGCCTTTTGTTCTCAGTGATCAAGACCAATCTGATATTCCTGATTTGTGGATTTCGCTGTCCTGGGTATCACTATACAGCAGCAGATATTTTGCCACTATGTCATGTCTGAATGCATTTCCTATGGATATTCCAGTTTTCTTTTCCCTTCTAAAACATGCTGGTTGGTGGATTGTCTCTTTGCCATGGACTAGCATaccatctagggtgtattcttaccttgtgcccagtgttcttgggatatGAGCTACACTAACCACAaccctgtccaggataaagtgaCTGAAGACAAATGAATAAGAATCACCAATCCTAAGATGGGCTTGACATTGATAGATACCACATTGCACCTTAGAAACATTTCTCTTGATAGTGCTGACCTGTGATGGTTGCTAACGACACAGTGCCTCTCTTTGGTGCATATCCTGGATATAATAACTGCAGGAAGCAAGAAGGATTTTATGTCTTCTAGAAAGTTCTTTAGACTCAGACTTACTTTCACGCATTTCCTATGAAGTGCCTGAAGTGGGCTATAGCAGGTGATTAACCACCCGCTCTACTTTTCCCCCCaagttgtctttttttgtgCTGTTCAACTTTGTAACACTAAGTCAAGTTAATTAAGAATGTTTCTTCTTATAATCTACTTTTTACAGAATGTAATGACGATCCTTTGACAAGCCATATGCAGTTTATTATAGTGAGATCTCCTAACAAAAATATCAAGTAGGTTTATTGTGAATCTCACACAGACATGGATTTACTTGctgaatttgttttaaatcttaCAACCTTCCAACACATCTGTATAGGTGTCTTGTGGTTTCAAAAGAGCAATGCCAGAagcctttttttcctgttgtcaTGCCCTGTGTTGAAACACCATCTGAACACCCTGATATAATCACAATCTGCAGGATCCAGGTCAAGGTCATGTGACTCAGATGAAAGTGAGAGTCTTGTCTGGCCTCAGCAAGTACCCcatgtttgctttctttctcacagaatgcaaatttattatttttgtgctCTTGACAAAACTTGACAGCAGAAAGTCTTTGTGGTATAAACACCAGTGAGAAATCATGCTTTTATGAAATTATCTGGAGTTGCTCTTTAAGTATGAGTTCGATGCCACCCAGTGTACCAGTTGAATGTGAGTTGTTTCTGACTTGTGATAGCACTGCCAACCTCGATGTGAGAAATAGCCATTCCGACAGCTGTAAAAATCTGTACATTAATGAATGCTTAAATAACTATTTCTGTGAATGCACGCTTTTGCAAAGTCTTGTACATAATGAAGTATTATCTTGCCTGCTGTTTTTACGCCAGCGTCTTTGCGTTTAGACGCACCTTTTTTAGTATTTGGAAAAACTTTCTTTTCTGATTCCCTTTTACTGCATGATGATAATAAACCTTTTATATTAACAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112372 lncRNA downstream 741 6029309 ~ 6030675 (-) True G94608
TU112371 lncRNA downstream 2181 6025360 ~ 6029235 (-) True G94607
XR_004578356.1 lncRNA downstream 117823 5911768 ~ 5913593 (-) True LOC117597596
TU112144 lncRNA downstream 244985 5713843 ~ 5786431 (-) False LOC113534829
TU112194 lncRNA downstream 327625 5703581 ~ 5703791 (-) True G94441
TU112506 lncRNA upstream 188053 6230856 ~ 6231165 (-) True G94728
TU112508 lncRNA upstream 190202 6233005 ~ 6233239 (-) True G94730
TU112510 lncRNA upstream 195878 6238681 ~ 6239748 (-) True G94732
TU112511 lncRNA upstream 197398 6240201 ~ 6240526 (-) True G94733
TU112512 lncRNA upstream 197814 6240617 ~ 6242160 (-) True G94734
XM_026927349.2 mRNA downstream 103118 5924531 ~ 5928298 (-) True chst8
XM_034305355.1 mRNA downstream 221899 5807422 ~ 5809517 (-) True LOC117597570
XM_034305354.1 mRNA downstream 224234 5805677 ~ 5807182 (-) True LOC113534712
XM_034305479.1 mRNA downstream 235360 5792221 ~ 5796056 (-) True LOC113534713
XM_026927799.2 mRNA downstream 246011 5756438 ~ 5785405 (-) False LOC113534829
XM_026927517.2 mRNA upstream 5673 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA upstream 5673 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA upstream 5673 6048476 ~ 6171119 (-) True gramd1bb
XM_026927522.2 mRNA upstream 5673 6048476 ~ 6171118 (-) False gramd1bb
XM_026927521.2 mRNA upstream 5673 6048476 ~ 6171118 (-) False gramd1bb
XR_004578382.1 other downstream 1538677 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 1857822 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2499725 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3263118 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 3280247 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 151272 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 822465 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 1105141 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1399570 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2425498 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile