RNA id: XR_003403522.2


Basic Information

Item Value
RNA id XR_003403522.2
length 5382
RNA type misc_RNA
GC content 0.57
exon number 24
gene id shank3a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7438091 ~ 7694427 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtgccggggtatgagtgtgtgtgtgtgtgtgcgcgtgaaaGGGCTATGCAGTCAGTGCTCCACACACACGGAGCATGCTTGTGAGTGGAGGCTCCGGCCAACATGAGCCTCCCGAGCCCAGAGCGCGTCCACAGCATCAGCCCAAACCCGCGTGCACCCTCCTCCCTTTCTCgctccctccctcactccctccctcgctccctctctTCGTCCACAAGCCTCAGCCGCACCGCCTCTCCCGCGCCAGCCAGGGGGACAGCTCCCGCAGTTCCCACGGTGACGGTTGCCGAGCGCCGGCCTGCCCCATGGAGGAAGCCCAAGGCAACACGCTGGTCGTCCGCATCGGCATCCCCGACCTGCAGCAGACGAAATGCATGAAGTTTAATGTGGAATCTCCTATCTGGCTGTCTAAACAGCGCATCCTTTGCGCGTTGAACCAGAGCCTGAAAGACGTCCTGAACTACGGCCTTTTCCAGCCTGCATACAACGGCAAAGCGGGCAAGTTCCTGGATGAACAGCGCACTCTGAAGGAGTACCCACTTCCCACTGTCACTCCCATACCATACCTAGAGtttCGCTATAAGAGGCGTGTATACACACAGACCCACCTGGATGACAAGCAGCTAGCCAAACTACATACTAAGGCTAACTTGAAGAAGTTCATGGAGTATGTTCAGCAGAGGAATACGGAGAAGGTTTCAAAGTTTTTGGAGAAAGGCCTGGACCCAAATTTCCATGACCCAGAGACTGGGGAGTGTCCATTAACGATGGCGGCTCAGTTAGAAGGCTGTGCAGAGCTCATTAAGGTGTTGAAAGGTGGAGGAGCTCATCTGGACTTCAGAACCAGAGATGGCATCACTGCTCTCCACAAAGCTGTGCGCACAAAAAACCATACAGCTCTGATAACACTGCTGGACCTGGGTGCGAGTCCGGACTATAAAGACAGTCGGGGTTTGACTCCATTGTACCACAGCTCCATGGTGGGAGGCGACCCCTACTGCTGCGAGCTGCTCCTGCATGACCACGCTCAGGTGGGCTGTGTGGATGAAAACGGCTGGCAGGAGATCcaccagGCCTGTCGTCATGGACACGTGCAACATCTGGAGCATCTTCTCTTCTACGGAGCTGACATGAGTGCGCAGAATGCTTCTGGAAACACTGCCCTACACATCTGTGCCCTCTACAACCAGgatAGCTGTGCACGTGTTTTGCTGTTCAGAGGAGCgaataaagagataaagaacTACAACAGCCAAACTGCCTTCCAGGTGGCTATTATAGCTGGAAATTTTGACCTGGCCGAAATAATAAAAGTTCACAAAGCATCAGATGTTGTGCCTTTCAGGGAAACGCCTTCCTACACAAACCGCCGACGCGTGACAATAGGAGGTGGCACTCTGACCTCATCACGCTCCCTGCTTCGTTCCGCCTCCGACAATAACCTGAACGGGGCCGAGACGGGTACTGCCCACTCTCCCGTGCCCTCTCTGCGCAGTCTGCCCCCTCTGGCACCCCCTGGAGGTGAGGCAGCAGCCGACGGTAGCCTCCAGAGCACCGGCAGCTCCCGCTCCTCCCACTCACGCTCACCTTCTCTGCACCGCGTCAGCGAGGAACCCGACCCACACGTCCTGCGCAGAcaccccacatacacacacgggCGCGGCCGCCTCAGCCCTGGGACAGTGCAGCGGGATGTCAGCCCTCCACCCGCCGGGCCTTCGCACACACTCGCCGGCGCCCGCGGGCCCAAAAGGAAACTCTACAGTGCCGTGCCCGGGCGTACCTTCATTGTGGTGAAGCCCTACACACCccagggagagggagagatccAGCTGAACCGTGGAGAAAGGGTCAAAGtGCTCAGTATAGGAGAAGGGGGCTTCTGGGAGGGCACGGTTAAAGGGAGGACTGGCTGGTTTCCTGCAGAGTGTGTGGAGGAAGTGCAGATGAGACAGTATGACCCTCGACTAGAAACAAGAGAGGATCGTACGAAGAGGCTGTTCAGACACTACACTGTGGGCTCCTATGACAACTTTACCTCCTACAGTGATTACGTCATTGAGGAGAAAGATGCCATGCTGCAGAAGAAAGAGAACGAAGGTTTTGGTTTTGTCCTGCGGGGAGCAAAAGcggaaACACCCATTGAAGAGTTTACCCCCACGCCTGCCTTCCCTGCATTACAATACCTGGAGTCTGTTGATGTGGAGGGCGTGGCCTGGAGGGCAGGGCTAAGGACAGGTGACTTCCTCATTGAGGTGAACGGAGTGAACGTAGTGAAGGTGGGCCATAAGCAAGTGGTGTCCCTAATCCGGCAAGGCGGGAGCAATCTGCTGATGAAAGTGGTGTCAGTGACACGCAAACCAGAAACTGAGGACGTGGTCAGGAAAAAGGCACCACCGCCACCCAAGAGAGCGCCCAGCACCACGCTCACGCCAAGGTCCAAGAGCATGACTGCTGAGCTTGAGGAGCTGGCATCTGCAAGGAGGAGGCGAGGAGAAAGGCTAGATGAAATCTTGGCCTCTCAGGAGTCAGCAATGAGGCCGAAAGTGGAGGCAGACTACAGAGCAGCCACGGTGAAGCAACGACCAACCAGCCGTCGAATTACACCAGCAGAAATCAGTGTGAGATACCATACAGATTCTCTTTTTGAGCGGCAAGGTCTTGCTCTCCATGGTCCTCTTCACCCAGCACTGGAAAAAGCTCACATTCAGCTGCCCAAAGGCATGTCCAGAACAAAGTCCTTCGGAGCTACTGAGGAGGACCGGCTGTCTGCCCTGGCGGCAGAGCACAGGTTTCCACGGAGCTCCTCGATGACAGACACCCTGAGAGACAGTCACAGCATCCCTCCTCCACCTCAGACagcaccacctccaccaccctCACTCTACTACCTGGACATGGGTCCACCTCCCCCTTTCTGCCCACCCCCTCCTCCGAGCCGTGTTCATGATCCCAGCCGCTCCAGCTTTAAGCCAGGCTCAGAGCCCCGACTCCATGGCCTACCACAGACCATGTCCGCTGAGCTGTATGAACCCCCACGCCACAGTGCCCACATAGAGCGACAGAAGAAGGCCCGTTCCATGATTCTCCTGCAAGACTCGTCCCACCATTCTATAGAGCCCACAGACATCCCACGGCCCGGCCCTGCCTCCACCCCACCAGAGAGAATCAAGCGCAAAGGACGCATTATCGACAACCCTTACGCAAATGTAGGCCAGTTCAGCATGGGCCTGTACACCCCACCACCCAGCAAGCCCCAGCGCAGGAAGAGCCCACTAGTAAAGCAACTGCAGGTGGAGGATGCCCAAGAGCGAGCCTCGCTGGCACTGGCTTCAGTCCACTCCAGGGAGCATTCACCCACAGGCCGACTGCCAGCTCACCATACTAGCAGGGCAGAGTACTACCAGCAGCAGCTGCTACAGGAGCGCAGTCGTGCTCAAGCTGAGGGTGTACTGCAGGGCAAAGGGCATTTTGCTGCCGCAATTGCTGGGGCTGTCAAGGACAGGGAGCAGCGTCTTGAGGAGCGGCGAAAATCCACAGTCTTCCTGTCTGTGGGCACCATGGAAGGCAGCTCAGCCCCACCGCTGGAATCCCCCTTACTCACACAGTCTCATTCTGTTGATGAACGCCTGCTCACCAGTGAACTTGGTCAGCTGCCTCCACCCGCCCTGGCACTGCGACCCTCTTCAAGTGGCACAACTTTCATCCACCCACTGACAGGGAAGCCCCTTGACCCAAACTCCCCTTTGGCACTTGCGCTGGCCGCAAGGGAACGGGCTTTAACTTCCCAGAGCCAATCCCCTGCTAGCAGCCCTGAGCCTAGGACTAAGCATGAGGCTGCTGGTGGTGTGCTGTTCATGGACACCCAGACCAAAGAGGCTGAGGGCGAGAGGGATCTTGCATCACTCTCCTTTTCCCCTGGAGAAAAAAGGAGCTACACATCCACCCCCACTAGCAAGATCTCATGGGGGACACCAACAACcacaagaaaagaaacagagatgggaacagagaagaaagaggagaagaaggTAGAAGACAAGAAGAGCATGATCATCAGTATCATGGACACATCGCAGCATAAGACTGCTGGGCTTATTATGGTTCATGCAACCAGTAATGGACAGGCAGTAGGTCTGGGCCCAGAACATGTCTCCCCTCCTCCCAAAGGCATAATTTCAGAGAGCCCAAAGCCCACATTAGCTGAAATCAAGCGGACCAAGTCTCCCAGTCCAGAAGCACCCTCCACACCAACTCCAACCCCTGCCACACCTTCAACCCCCAAAGCACCTACTAGTCCTTCCTCAGATAAAACACCCCAGGCATCCTCTAGCCCATCCTCAGATAAAACCCTGGCCCAGGGAAGCTCAGAGGAAGATGTGGAGCCCTATTCTGTTACCTTACCACCTGCCATGCTGTCCTCTAGTGATGAGGAGACACGGGAGGAACTGCGCAAAATTGGTGTGGTTCCTCCACCAGATGAATTTGCAAATGGTCTCCTAGTGAAGGCACCTGGAACTGCTGCTACACCTTCAGCAGCCAAGCTAGTGACCCCCTCAGAACCATCCCCAGTCCCAGGTCCCACACCTCCAACCGCAGCCGCTACAGCAGCACAGGCTCCTGCCACCAGCGGCCAACCAGCAGCCTCAGGGAAGCCATCTGAGCCCCACCTGGGCCCAGAGTCTGCTGCTGACTCTGGAGTAGAGGAGGTGGACACTCGCAGCTCCAGTGATCACCATCTGGAGACCACGAGTACCATCTCCACTGTCTCCAGCATGTCCACCCTATCCTCAGAGAGTGGCGAGCCCACTGACACCTACACGTCCCATGCCGACGGCCAGACCTTCATCCTTGATAAGCCGCCAGTGCCTCCAAAGCCAAAGCTCAAGTCTCAGCTCAGCAAGGGCCCAGTAACTTTCAGGGACCCCCTGCTCAAACAGTCCTCGGATAGTGAGTTGCTCTCACAGCAGCATGCAGCAGCGCTGGCTGCTGCCACGGGGACCTCGGGCCCAACAAGACCCCGCTACCTCTTCCACAGACGCTCCAAGCTATGGGGGGACCCCATAGAACCCCGTCCGCTTGCAGGCGCAGAGGAAGGCAAACCCACTGTGATAAGTGAGCTAAGCTCCAGACTGCAGCAGCTCAACAAGGATACATGCTCACTAGGTGAAGAGCCACTCATAGGCTCACTCGACCCTGGACGCAAGTCACCTGTGGCCGGTGCCAGATGTGACAAGGACATGGAAGAGACTAAACCTTAGCTTTTAGCCACTAGGAACTGAATCTGAGGCTAAGCCCCGGAGGGCCGGGCACCTGTACTCTTCAGCAGTCTAGGGGAGCTTCATACCATCTCTCAGCGAAGTTATGGCACCACATACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113322 lncRNA downstream 11610 7387732 ~ 7430763 (-) True G95449
TU113344 lncRNA downstream 20522 7420628 ~ 7421851 (-) True G95460
TU113311 lncRNA downstream 105807 7336365 ~ 7336566 (-) True G95440
TU113068 lncRNA downstream 114670 7327488 ~ 7327703 (-) True G95227
TU112878 lncRNA downstream 354332 7086511 ~ 7088041 (-) True G95066
TU113668 lncRNA upstream 102493 7716589 ~ 7794006 (-) True G95752
TU113669 lncRNA upstream 102493 7716589 ~ 7794006 (-) False G95752
TU113700 lncRNA upstream 206294 7820390 ~ 7859029 (-) True G95773
TU113718 lncRNA upstream 247426 7861522 ~ 7861806 (-) True G95783
TU113720 lncRNA upstream 258637 7872733 ~ 7873314 (-) True G95785
XM_026926949.2 mRNA downstream 16792 7421972 ~ 7425581 (-) True LOC113534276
XM_034305523.1 mRNA downstream 23499 7415467 ~ 7418874 (-) False LOC117597612
XM_034305522.1 mRNA downstream 23499 7415467 ~ 7418874 (-) True LOC117597612
XM_026927469.2 mRNA downstream 39256 7399292 ~ 7403117 (-) True tsen34
XM_026927001.2 mRNA downstream 44731 7391865 ~ 7397642 (-) True bcl7bb
XM_026927027.2 mRNA upstream 114992 7729088 ~ 7780398 (-) False mapk8ip2
XM_026927026.2 mRNA upstream 114992 7729088 ~ 7780398 (-) True mapk8ip2
XM_026927298.2 mRNA upstream 196116 7810212 ~ 7815160 (-) True sephs1
XM_026927297.2 mRNA upstream 196944 7811040 ~ 7817597 (-) False sephs1
XM_034305145.1 mRNA upstream 196944 7811040 ~ 7817589 (-) False sephs1
XR_003403498.2 other downstream 284885 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 577034 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1248226 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2949634 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 3268779 4173288 ~ 4173594 (-) True G93711
TU114125 other upstream 854205 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2654381 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2654381 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 3973905 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 4697986 12312082 ~ 12314525 (-) False admb

Expression Profile