RNA id: XM_026927787.2


Basic Information

Item Value
RNA id XM_026927787.2
length 4246
RNA type mRNA
GC content 0.51
exon number 17
gene id btbd11b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11320829 ~ 11382591 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGAAGAGGGCTAAATCGGTCACGAGGACCCTGGAGGATTTGACACTCGACTCGGGTTACGGCGGAGCGGCGGACTCGTTCAGGTCGTCTAGCTCGTCACTGTGCTGCTGTCCCGAGGCGCACGCACCGTACGCGCATGGAGCGAGCTGCTGCCGCCTAACCGACCGCATGCGCAGTCGCCACGGCAGCTCGGACACGGTGAACGCCGCGCCGGTCGACGACGGCGAGACGCTGGAGTGCCCGGGCCACTGCGCCAGGCTTCCCGAGCTCGACGAGGTACCGTGGAGCCTCGCGGAAGTGCAGTTGGTGCTCGGCAAGCAGGGCGACCCGCGATGCGCCAACTCAAGCGCCGAGCTGCTCGCCAGGCTCTCGGCTCTGCTGAGCCGCGCACTGGTGCGCATAGCCATGGAGGCGCGGCGGCTGAGCCTGCGCTACGCGCGCTGCACCAGGTACGAAGTGCAAAGCGCCGTCAAAATCGTGCTGTCGTGGACCGTCGCGGCGAACTGCGCTGCCGCCGCGCTCGGCGCGCTCTCCACGTACACCATGAGCACCGAGGACAGATACAGCCGCGGCAAGTCGGAGCGCTGCGGGCTCGTTTTCAGCGTCGGGAAATTCTTTCGGTGGATGGTGGAGAGCAGCGTGGCGTCGAGGATCCACGAGCACGCCGCCATCTACCTGGCCGCCTGCATGGAGAGCCTCTTCCGCGAGGTGGTGAGCCGCGTCCTGAACAGCGCGCTCTTGGAGGAGGGCAACGGCATGCCAGCGTCGGTCACTGTGGAGGCCTTTGAGCAAGCTATCAACAACGATTCGGAGCTGTACGGTCTCCTTCAACCTTACCTGCACCTCGTATGTGGCAAAAATGCTAGTGGTATCCTGAGTCTGCCAGACAGTTTTAACCTACACAGAGACCAGCAGCGGTCAGGGAAGGCTGGTGATGCCTACAGTCAGGCCGAGCTGCGCACTATAGAGCAGTGTCTGCTGGCCACACGTGTGGGGAGCATCGCTGAGCTCAGTGACCTGGTGTCCAGAGCCATGCATCACCTTCAACCCCTGAGTATCAAGAACCATACTAACAGCACTCCTGTGCACCAGAAGAACAATCTGCTCCACTGGGAGCCTGAGGCTCTCTACACTCTCTGTTACTTCATGCACTGCCCTCAGATGGAGTGGGAGAACCCCAATGTAGAACCCTCCAAAATCACTCTTCACACAGAAAGGCCATTTATGGTACTACCTCCCCTTATGGAGTGGATCCGAGTGGCCGTAGCCCATGCCGAGCACCGCCGCAGCTTCTCAGTGGATAGTGATGACGTTCGGCAGGCGGCCCGGCTCATGCTGCCAGGAGTGGACTGTGAACCTCGGCAGCTAAAGACAGATGATTGTTTTTGTATGTCACGGAAGCTGGATGCTGCATCCACTGAGGCAAAGTTTCTGCAGGATCTGGGGTTCCGCATGCTCAACTGCGGCCGCACGGACCTGGTAAAGCAGGCCATCAATCTGCTCGGACCTGAAGGCATCAACAGCAAGAATGAACAGGGTATGACTCCACTGATGTATGCATGTGCTCGTGGCGATGAGGCCATGGTTCAGATGCTGTTGGATGCGGGAGCTGATATCAACAATGAGGTGCCCAACACAGTGCACCAGCACCCCTCAATCTACCCCGAGACTCGGCAAGCCACGGCACTCACCTTCGCCGTGCTCCACCAGCACGTCCCCGTGCTGCAGTTGCTGTTGGATGCTGGGGCAAACGTGGAGGGCTCTCTGCAGGACGGAATGGAGAACTACACAGAAACACCTCTGCAGTTAGCTGCTGCTGCAGGCAACTTTGAGCTGGTCAGTCTGCTGTTAGAGAGAGGAGCTGACCCAACGGTGGGTACCATGTACCGCAACGGCATCTCCACAACCCCACACGGCGAAATGAACTCCTTCAGCCTGGCTGCAGCACATGGACACAGGAATGTGTTCCGTCGGCTACTGTCCCAGTCTGAGAAGGAAAAAGGGGATGTATTGTCCCTGGAGGAGATCCTGGCTGAGGGGACAGAGGCAGGGGAGAGGAATTCTTTGCAGATGGAGGCAGCACGCACCGGGAAGGCTAAACTCAGAGCTCTGAGAGAAGCCATGTACCACAGCACAGAGCACGGCCATGTGGACATCACACTGGACATACGCAGCTTAGgaGTGCCATGGACACTGCACACCTGGCTGGAATCTTTGCGCACGTGTTTCTTGCAGCACAGGCGGCCATTGATCCAGGGTCTGCTGAAGGAGTTCAGCTGCATCGAGGAGGAGGAGTACACTGAGGAGCTCATCACACACGGCCTGCCTCTAATGTTCCAGATCCTCCGTGCCAGCAAGaaTGAGGTGATCAGTCAGCAGTTGGCTGTGATCTTCACTCAGTGCTACGGACCCTACCCTGTTCCTAAACTCACCGAGCTCAAGAAGAAACAGACCTCCAGACTCGatcCCCACTTCCTGAACAATAAGGAGATGTCAGATGTGACATTTCTGGTGGAAGGAAAGCCGTTCTATGCTCATAAAGTTCTGCTCTTTACTGCCTCTAACAGGTTTAAATTGCTACTATCGAACAGACCAGCATCAGAGAACACCTGCATTGAAATTAGCAACGTGAAGTATAATGTATTCCAGCTGGTGATGCAGTATCTGTACTATGGTGGAACAGATGCACTACACATCAGGAACACTGAGGTTATGGATCTGTTGTCTGCGGCTAAGTTTTTCCAGCTGGAGGCACTACAGAGGCACTGCGAGATCATATGCTCCAAGAACATCAACACTGAGACCTGTGTAGAGATCTACAACCATGCTAAATTCCTGGAGGCACCAGAGCTCTTGTCCTACATTGAGGGCTACTTCCTGAAGAACATGGTGGTATTGATCGAACTGGAGCCATTCAAGCAGCTTCTCTACGACACTCCAGTGGAGAATACAGGCCATGACGTGCTGCATGCCCTGGAGAGGGCTCTGGCCACCAGAATTCACTCAATCCACTTGTCATCATCCAAGGGATCTGTAGTTTGAGACTGTCAAAATTGCTGCTCTGACACGTTTGAAGCTGATGTGCATTTTATCCAATGCTATAATAGCAGGGTAGGTTAAGTGTGTGTTCTATTTGTTAGTGTAGCAGTACTTGAAATGTGCACTGGCTAAATCAGCAGACGTATTATATCATTTAATGGAGAAAATGTTAACAGGAGCTCAGGAGGTGGTAAACTGCTTCCTGTTAGGAGCTATTAGATAAACAGCTTCATTGATTTTTGCCATTACGTTTCTCATTTTAGATCTATTCGCTGAGGCACCATGCAGCTCAGTACATATTTTCAAATTACTGTTATTGTAGTACCAAGAAAAtgcaatgaaagaaagaaaaacgtAGTACCTTTTGCAATGTATGATAGAAAACCCCACCTCACACATACTAGAGGGCACTTTTGCTTTTATAAATCTGTCTTCAGTATCAGATCCTTTTTAAAAGTGCCACCGTCACCAtccaagaaacacacacactaccatggcaataataaatacagttataATAGCTGGCCATCAGACTATCAGCCATCTTCGTAGATGTTTCGTGGCATGCCTGACTCATATACTTGCTTCCACTCAGCTCTACGTTGTGAAAGTGTGTGCCTTTATCATCACAAACTGTCATCTGTATAGCAAGAGGATAAAGCTTAAATAAAATACGgctatttttgtaaatatacagtgtaaATCTCTCATATGGAGAGCTCGCTCCACCtgtaattatatgtatataacagATTTCCCCACTCACCATATATGTACAAAACTCAATTAGGTAACAGTTGTAAATGTGCAGatgcatgtattttttatttgttttatttttatttcttttaccaGTGTTAGGTTCGTGTATGTGGAGTATTTTGTGttagacaaaaagagaaagaatccTATTACGAGCATGGGGTTAGAGAGCCGTAGCTGTGAATATCTTTGTTCCTGAGGAGCTGGGATGAGATTCTCGACTCAGTAGGTGCCTGCAATATGTCGTGTCTCTTCTCATGAAGTTTGTGCAACTATGTGTAAATCCCCCTGTGACTAATTCCTTTtctttataaagattaatacaaaaaaaaaaaaaaacgtatctGTGCTTTAAGTTATTTTATATGTGAATTTGGTTAAAATATGCAGTTCAGCTCTGGGTTTTAAAGACGCTTGTGTGCAGAATTTATGATTCACGGTG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K10483 BTBD11; BTB/POZ domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115775 lncRNA downstream 129989 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 132806 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 146656 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 146656 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 659777 10657192 ~ 10661052 (-) True G97246
TU116033 lncRNA upstream 13525 11396116 ~ 11477114 (-) True G97831
TU116158 lncRNA upstream 298138 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 308406 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 308406 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 369934 11752525 ~ 11753198 (-) False plekhg7
XM_026927055.2 mRNA downstream 2637 11308950 ~ 11318192 (-) True mlc1
XM_026927075.2 mRNA downstream 13788 11293326 ~ 11307041 (-) False panx2
XM_026927074.2 mRNA downstream 13788 11293326 ~ 11307041 (-) True panx2
XM_034305167.1 mRNA downstream 30777 11280607 ~ 11290052 (-) True trabd
XM_026927599.2 mRNA downstream 40860 11271252 ~ 11279969 (-) True selenoo1
XM_026927458.2 mRNA upstream 23972 11406563 ~ 11408320 (-) False mterf2
XM_034305059.1 mRNA upstream 23972 11406563 ~ 11408320 (-) True mterf2
XM_026927786.2 mRNA upstream 66893 11449484 ~ 11453878 (-) True tmem263
XM_026927467.2 mRNA upstream 87497 11470088 ~ 11484458 (-) True ric8b
XM_034305557.1 mRNA upstream 107051 11489642 ~ 11506690 (-) False rfx4
XR_004578315.1 other downstream 1026006 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1026006 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2842593 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3706733 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4163341 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 205410 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 929491 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1015096 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1038511 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1663232 13045823 ~ 13052311 (-) True G98770

Expression Profile