RNA id: XM_034304936.1


Basic Information

Item Value
RNA id XM_034304936.1
length 2559
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113534747
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3959381 ~ 3962625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGTCTCTCTTTACTCTCTTGCATGTGGTAATGGCCATTATTAATTTTTCCAGAGTGAATGGGACTGCTTGTAGCCTACAAGGAGAGCCTGCATACCCACAGATCTGGAAGGATGGTGATATCATTGTTGGAGGGGCTTTCCCCTTCCATAGTAGTTGGGAGACCATTGACTTATCCTATGTGGTCATGCCACCTCCAATGAAGTGCATGGGCCTTGATTTGAGAGCACTCCAGTTTTCCCAGACATTGATCTTTGCAGTAGAGGAGATAAACAACAGTTCTTCTTTACTGCCAGATGTCTCTCTGGGATACAAGATCTATGATACATGTAGTTTTGCAGCACAGGGGATTAGAATGGCCATGGCACTTGTTAATGGAAATGAGAATTCAATTTCAAATGATCACTGTACAAAGCCTGTCCAGGTCCAAGCCATAATAGGGGAAACATACTCATCAGTGTCTATGGCTATAGCAAACAGTATTGGGCCTTTCAGTGTTCCTATAatcagTCACTATGCCACCTGTGAATGTCTCAGTGACAAAAGGAAATATCCCTCATTTCTGCGCACCATTCCCAGTGATTATTACCAGAGCAGAGCACTAGCAGAGATGGTCAAGCACTTTGGCTGGACCTGGGTGGGAGCAATAAGAAGAGATGATGACTACGGTAACAATGGAATGGCTGCCTttactgaaattgcagtacagTTGGGTATCTGCTTAGAATATTCACTTCCATATTTTAGAACATACTCAAAAGAAAGGGTGTTGAGAATCATTGACCAGATCAAAATCTCCACTTCTCGTGTGATAGTTGGATTTCTTGACACATGGGATTTGGAGAATCTGCTGCATGTATTTTTTGAACACAACATCACTGGATATCAGTGGGTGGGAACAGAGGCCTGGATCTTTGACCCAGAGCTAGCTAATTTGGACAAGTACAATATACTACAAGGAGCTATAGGACTAGCTATCCCCAAAGCAAAGGTGACAGGCCTGCAGGATTTTATTCTAGATGTAAAACCATTGAAATCTGTAGGCAGTGCCATTTTTCCTGAATTCTGGGGGGCTCTGTTTGACTGTGAATATACAGTGCAGAATGATTCAGAGGGCTTGCCAGTGTGCACAGGAGAAGAGAAGCTGTCTGAAGTGGAAAACACATTCACTGACATGTCTCTGATGCCCATTTTTAGTAACGTGTATAAAGGAGTTTATGCTATTGCCCATACTCTACACAACCTTCttggctgcaaaaaaaaatgtcctacAAAGCAACAGCCTGATCCAATCACATTTCTAGAACACCTCAAAAAGGTATATTTCAAAACCAAAGAAGGGGAAGAAGTTTACTTTGATAAAAATGGTGACCCTCCTGCAAAATATGAGATAATAAACTGGCAAACAAATAAAGAGAATCAACATGAATTTATCACTGTTGGACTCTATGACTCTACTTTACCTAGTCATGATCAATTAGCAATAAACATGTCCTCTATAGTGTGGGCACAAAATACCAATCAGGTACCTATATCTGTATGCAGTGAGAACTGCCCTCCAGGTACAAGGAAGGCTGTACAGAAAGGAAAGCCTATCTGTTGCTTTGACTGCATACCATGTGCTGAAGGAGAGATCAGCAATATGACAGATTCTATTGAATGTGAACAATGCTCTCAAGATTACTGGTCAAATTCACAGAAAGATAAGTGTGTAAAGAAGGAAGTTGAATATCTGTCCTATGAAGAAACTATGGGAATTTTGCTGACAACTGTTTCTATTATTGGTGCATTTCTAACAATGGTAATATCAGTAATATTCTTTAGACATAAACATACCCCAATAGTCAAAGCCAACAACTCTGAGCTGAGCTTCCTGCTGCTCCTTTCTCTGACCCTGTGTTTCCTTTGTTCACTTACTTTCATTGGTCAGCCCTCTGAGTGGTCCTGTATGTTGCGCCACACAGCGTTTGGGATCACCTTCGTCCTCTGCATCTCCTGTGTTCTGGGAAAAACCATAGTGGTGTTAATGGCCTTCAGGGCTACACTTCCAGGtagtaatgtaatgaaatggtTTGGGCCTCCACAACAAAGACTCAGTGTACTTGTCTTCACTCTCATACAAGTCcttatttgtgtgctttggttgGCAATATCCCCTCCTTTCCCCTTTAAAAACCTAAAGAGCTACAAGGAAAAGATCATTCTAGAATGTCATTTGGGCTCAACAATTGGTTTCTGGGCTGTGCTGGGTTATATAGGTTTTTTGGCTattttctgctttgttttggCTTTCCTGGCACGGAAATTGCCTGATAATTTTAATGAAGCCAAATTTATCACATTTAGTATGCTAATATTCTGTGCAGTTTGGATCACTTTTATTCCAGCTTATGTTAGCTCTCCTGGCAAATTCACTGTAGCTGTAGagatatttgccattttggcctCAAGCTTTGGGTTACTGTTTTGTATATTTCTTCCAAAGtgttatatcatcatattgaaACCAGAAAAGAACACTAAAAAGCAAATTATGGGTAAAGCACCAGCGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578346.1 lncRNA downstream 13005 3944987 ~ 3946376 (-) False LOC113534402
XR_004578345.1 lncRNA downstream 13005 3944987 ~ 3946376 (-) True LOC113534402
TU111281 lncRNA downstream 223989 3735097 ~ 3735392 (-) True G93639
TU111190 lncRNA downstream 378175 3579017 ~ 3581206 (-) True G93557
TU111130 lncRNA downstream 505010 3425023 ~ 3454371 (-) True G93505
TU111341 lncRNA upstream 110590 4073215 ~ 4073533 (-) False LOC117597611
TU111357 lncRNA upstream 192632 4155257 ~ 4155497 (-) True G93707
TU111360 lncRNA upstream 209448 4172073 ~ 4172312 (-) True G93710
TU111366 lncRNA upstream 221130 4183755 ~ 4183993 (-) True G93716
TU111372 lncRNA upstream 254953 4217578 ~ 4217842 (-) False LOC113534736
XM_026927156.2 mRNA downstream 15418 3940497 ~ 3943963 (-) True LOC113534400
XM_026927155.2 mRNA downstream 25691 3930554 ~ 3933690 (-) True LOC113534399
XM_034305335.1 mRNA downstream 46263 3909969 ~ 3913118 (-) True LOC113534748
XM_026927436.2 mRNA downstream 53901 3899911 ~ 3905480 (-) True LOC113534546
XM_026927701.2 mRNA downstream 67457 3883628 ~ 3891924 (-) True LOC113534749
XM_026927157.2 mRNA upstream 2247 3964872 ~ 3968726 (-) True LOC113534401
XM_026927533.2 mRNA upstream 19494 3982119 ~ 3985740 (-) True LOC113534613
XM_026927015.2 mRNA upstream 43158 4005783 ~ 4009934 (-) True LOC113534321
XM_026927506.1 mRNA upstream 62402 4025027 ~ 4028395 (-) True LOC113534603
XM_026927497.2 mRNA upstream 68466 4031091 ~ 4036208 (-) True LOC113534594
XR_004578380.1 other downstream 427690 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1191083 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1208212 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2190586 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 2311095 1628629 ~ 1648286 (-) False sema6dl
TU111361 other upstream 210663 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 529921 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2231450 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2902643 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 3185319 7147944 ~ 7157488 (-) False LOC113534453

Expression Profile