RNA id: XM_034304938.1


Basic Information

Item Value
RNA id XM_034304938.1
length 3031
RNA type mRNA
GC content 0.56
exon number 24
gene id si:dkey-30c15.10
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30740467 ~ 30755090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCGAACGCGCGCGGAAATTCAAAAGTTCTTCCTTCAGTTGAACGAAGCGCGTTCACGAGAAACCGCCGTGTGTTGTTTCAGTCCTGTCACTGAGGAGGAGAGGATGGAAAAGCAGGCGGATAAAAAcccaaagagacagagagacccGCTGGAGGAGAACATCCCCGCCTCTAATGAGCTCGAGGCGGTGTTAAAGAGACGGCGCTTGGCTGCAGGAGGAGTCGAGAATCATAACCCCGAGCAGCGAGCTGTGAGGTCTCCGGCCCGGTCGCGGCACGTGGAGTCGGAGGTGAAACCGGACACGCCCGCCATCGCCTCGGTCCGACTCCGAGTTCAGCAGCTCGCCCAGAGACGGGATGgtggggcTGCGCTGGTCCAGCGCTGTATGTCAGACCCCGGGGCAGAGAGTCCCTCCAGCACTTTACTGCGAGACGTCTGTCACATCGgtgaaGGAGAGTTTATCTCTCGGTTGGAGCGCTTTAAGACCCCGACCCCAGAGAGCAGCCCCGCCCCGGCCACGCCCAGCACACGCCAGCTCTCCAGCTTTGTCCACAACATGCAGCAGCAGCTCAACGCCACCGCGACCCCCAGCAGCAAGGAGGCGTCCCGCATAcgccaggctcgAGAGGATGAGCTGAAGTCACTCAGGGTGCAGCCTCTCACAGAGAACATGTGGCTCAAGAGGAGCTTCTCTGACCCTTCACTGGCTGagAGAGTTACGCCTCCGAGCAGCTCTTGCGTTTGCCAGCGGACCAGAGCAATGCCTTGGCCTCCATTACAGTTTGAGAACGACGACTCCAGCATCGATTTCAAAGAATCTGAATGCAGTTTAAACTTCAGTGGCGTGAATGAGACGATGGGAGACAGTTTCAGCATCTCGTCTACCTTCACTGCAGAGACACAGCCTCCTGCTACAGCGCTTTGTGCTCCAGATTCCGTGGTGCGTCCTCATGAGGGAATGAGCACTTCTGCCTTAATCGACAAGATGTTCGAAGACGTCTTGCAGGCCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACACCGCCgacagagaagaggaagaagagaaagaggaagaagagcgAGGGAATGACAGCAGTGTGTCTGAGAGCAGAGAGGAAGCTGACGTGGAGACTGCTGAAACTGAGCCGAAGTTGAAATCTCCGAGTCCTAGCCCTGGAGGAGATGCAGAAGCTTGTGACGGAGAACAGAAAGAGTGCGAGAACTGGAACGAAGAAGAGGAAgtggctggagagagagaggagagcgCAGTGTGTAATGAGGAAGACTTCCTGTCTCTCCCGCCGAGCTGCGTCCTCTCTCCCCTCAGCAAGTCTGTCGAAGCCGTCGTCACGCCGATGaGGTTGACTGCCACTGCGCCTCCTCCCATGGTGCCGTGTGATCCTGCAGAGGAagtggccacgccccctgcgCCACCTCTGTACAGTATTGATGCGTACCGCTCTCAGAGAAAGATTCCTCCTCCGTCCTCTCAGAGTGTTACTCCTGGAGTTCAGAAACAGCGTGGTGAGAAATCTCGCATCAAACCGACCGTCAACACCAAGGAAACCATAAAGgctctCAGTGACGAGGCGTCCAAGCTGCAGACTGTTATAAACCAGACTCTCCAGGCCCTGAGCTGCTGCAGTGATGAAGAACACGGCAAAGGATCTCTGCAGGAGGCAGAAGCTGAGAAACTCCTGCTTGTTTCCAGTGAGAAGCGTGCGGCTCTGCTGGCCGAGATCAGTCGCCTGAGAGAGGGAGGAGCGGGACGAGAGCCGGACCTCCACCCTGTCCGTCTGCAGCCCTGTAGAGGCACCGTCAGCATCAACAACATCCAGCTGCCCCTCAAGGTGGAGTTTGTGTGCTCCGCCCGCACAGCTCGTCCTACTCACTACTTTTTCATCCTGATCCGTTACGGAGCGTGTAACATCGTGGCCACTCCGCTGGCGACTGCTGCTGACGCTGAGAACGGAGACACCATCACCTTCCCCACCTCCATCACACTgCAGGACATTCGCTCTAACTTTGAGATTGATGTAGAAGTCTACAGCCTGTGCAACAGCGCAGCGAACAGCAGCAGCGCTAACGTTCAACAGCACCGCAGTTCCACTCGATCAAAAGCGACACCAAAGAAGCTACTCAGCAGCATtaagAAATCCAACCCGTGTTCCACTACTGGAGCTTCATCTGCTCTGGATCCTCAGCGCTCCAGTAACTTCTCTCTAGTGGGTTCTCACAAGATCACGCTCTCCTCGCTGGGGCAGAGCAAGTTCCTGCTGGACAAGATGAAGTTTGAGGGCAAAATCAGGCGACTCCTGGGAGATGAGTTTCAGGAAAAGGTGCCCTTCCTGTCTCCCCTGGAGGGTCACATCTACCTGCGGCTGCACAGTGACAGTCACTCCAACGTACAGCACCAAGGATTTCTGACCATGTTTGAGGATGTGAGTGGGTTTGGAGCGTGGCAGCGTCTCTTCTTTAAGCTAGAAGGAGGTATTCTGTATTACTGGAACTACCCCAATGAGACGAGCAGCAAGccagcagagggcagcatCTCTCTGTGTGGCTTTGACAGCGTGAGGCCTGTGGAGAGGGACTCCTGCGCTCGGCCTCACACCTTTGAACTGGTGAACTCTAGGACCCTGCAGCAAGACCAAAGCCACACCTTAACCAAGAGCTGGTTCTCAGCAGACACTCGTGAGGAACGAGCAGACTGGATGGAGAAGCTGAACCAGGTGCTGCTGGACCTCCACACATGGAGCCGGCGAGCTGCTGGAGGAGAGAACGACCGAGCCAACATCTCGTCTATCACGGCAACGTCACGGGAAAGCGTCCTGTAGCACgttactgatacacacactgacaccagATGAAAGCAATTATCACTCAGTGTGAAGAGTAAAACACCCCGAGTCTGACGGACCGAGCAGCTTAGAGccgtgtgagagtgtgagagtgtgagtgagagtgtgcgTGAGAGGTGCGTGAGAGGTGCGTGAGAGGTgcgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402799.2 lncRNA downstream 25014 30714118 ~ 30715453 (-) True LOC113526678
TU127103 lncRNA downstream 270564 30443523 ~ 30469903 (-) True G107550
TU127127 lncRNA downstream 317129 30421252 ~ 30423338 (-) True G107574
TU127088 lncRNA downstream 333503 30368887 ~ 30406964 (-) True G107536
TU127085 lncRNA downstream 371279 30368338 ~ 30369188 (-) True G107533
TU127459 lncRNA upstream 30503 30785593 ~ 30849684 (-) False selenot1b
TU127460 lncRNA upstream 55957 30811047 ~ 30826087 (-) True G107800
TU127464 lncRNA upstream 64116 30819206 ~ 30820422 (-) False G107803
TU127466 lncRNA upstream 65619 30820709 ~ 30822357 (-) True G107804
TU127468 lncRNA upstream 73061 30828151 ~ 30829653 (-) True G107805
XM_026913941.2 mRNA downstream 8408 30728044 ~ 30732059 (-) True bbs10
XM_026913535.2 mRNA downstream 29744 30700440 ~ 30710723 (-) True caps2
XM_026914118.2 mRNA downstream 115134 30614083 ~ 30625333 (-) False cd9a
XM_026913544.2 mRNA upstream 1359 30756449 ~ 30760179 (-) True pdp2
XM_034305116.1 mRNA upstream 37850 30792940 ~ 30804496 (-) True si:dkey-30c15.2
XM_034305072.1 mRNA upstream 90947 30846037 ~ 30849697 (-) False selenot1b
XM_026911251.2 mRNA upstream 95314 30850404 ~ 30857147 (-) False LOC113524884
XM_026911250.2 mRNA upstream 95314 30850404 ~ 30857147 (-) True LOC113524884
TU127397 other downstream 8436 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 395591 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1026475 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3583327 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 4132138 26569085 ~ 26608329 (-) False LOC113526510
TU127465 other upstream 61489 30816579 ~ 30819614 (-) True G107803

Expression Profile