RNA id: XM_034305024.1


Basic Information

Item Value
RNA id XM_034305024.1
length 3026
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC117597527
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4269479 ~ 4273667 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGAGTCAATATTTACTGTCTTGCATATGCTAATAGCCATCATCAATTTTTCGAGAGCTAATGAAACTACTTGTAGCCTGAGAGGAGAGCTTTCATACCcacatttttggaaaaatggtgATATCATAGTTGGAggaatttttccattttatagTAGTTGGGAGTTCACAGACTCATCCTATTCTGTCATGCCACCTCCAATAAAGTGCTCAAGCTTAGATTTCAGAGCCTTTCAATACACACAGTCCTTGATCTTTGCAGTAGAAGAGATTAACAACAGTTCCTCTTTACTTCCTGGAGTCTCACTGGGCTACAAGATCTATGACACCTGTAGTTCTTCAGCAATGGGAGTTAAAATGGCAATGACACTTATTAATGGAAACGAGAACTCGGTTGCACATCAGGTCTGCACAAAGCCAGCCCAGGTGCAAGCCATAATAGGCGAGGCATACTCATCGGTGTCCACAGTTATAGCAAAGAGTATTGGACCTTTCAACATGCCCATAATCAGTCACTCTGCCACCTGTGAGTGTCTCAGTGACAAAAAGAAATATCCCTCATTTCTGCGCACTGTTCCCAGTGATTACCACCAATCCCGGGCCCTGGCAGAGATGGTCAAACACTTTGGCTGGACCTGGGTGGGAGCAATAAGAAGAGATGATGACTATGGTAACAATGGGATGGCTACATTTACTAAAGTTGCAGAACAGTTGGGCATATGCTTAGAATATTCCCTTCCATTTTTTAGAACCTACTCACAAGAAAGAGTGCTGAGAATCATAGAGCAAATCAAAAGCTCCACTTCTCGAGTGATAGTAGGATTTCTTGCTCACTGGGATTGGGAGATTTTGGTACATGTATTTACTGAACACAACATCACTGGATACCAATGGGTGGGAACTGAAAGTTGGATCGGTGATCCAGTAGTGGCCACACTGGATAAGCAAAATATACTGCAAGGAGCCATAGGGCTTGCTATTTCCAAAACAACAGTAACTGGTCTAGAGGACTTCATTCTAGATATAAAACCACTGAAATCTGTAGGCAgtggtatttttaaaaaattttgggAAGCTCtgtttaattgtaaatatacaATGCAGAATGATTCGGGGGACTTACCAATGTGCACTGGAGAAGAAAATCTGTCCGAAGTGGAAAACACCTTCACTGATATGTCCATGATGCCCATTATCAGTAACGTGTATAAAGGTGTTTATGCCATTGGCCATACCCTACATGACCTTCTTGGCTGCAAACAAACTTGTCCTACAAAGAAGCAAGCTGATCCTCTCACTtttcttgAGCATATCAAAAAGGTGCATTTCAAGACCAAAGATGgtgaaagtgtttattttgataaaaatgGTGACCCTGcaggaaaatatgaaataataaactggcaaacaaataaagaacacCTGCATAAATTTGTTACTGTTGGATTTTATGACTCCTCttttcctggtcagagtcgTTTATCTGTAAACGTGACCTCTATTGTTTGGGCAAAAAATACTGATAAAGTACCACAATCTGTATGCAGCGAGAGCTGCCCACCTAGAACAAGGAAAGCTGTGCAAAAAGGAAAGCCTATCTGCTGCTTTGACTGCATACCATGTGCTGCAGGAGAGATTAGTAATATGACAGATTCTATTGAATGTATACAATGTCAGCAAGATTACTGGTCAAATCCACAGAAGGACGAATGTGTCAAGAAAGAAATTGAATATCTATCATATGAGGAAACTATGGGAATATTGCTCACAGTTATTTCTGTTGTCGGTGCATTTATGACAATGGTAATAGCAATCatatttcttaaatataaaaacactccAATAGTCAAAGCCAACAACTCTGAGCTCAGCTTCCTGCTGCTCTTTGCACTGGCTCTATGTTTCCTTTGTTCACTTACTTTCATTGGACGTCCCTCTGAGTGGTCTTGTATGCTGCGCCACACAGCATTTGGGATCACTTTTGTCCTCTGCATTTCCTGTGTTCTGGGAAAAACAATAGTGGTGTTAATGGCCTTCAGAGCTACACTTCCAGGCAGTAATGCCATGAAATGGTTTGGGCCTCCACAACAGAGACTTAGTGTACTTGCCTTCACTCTCATACAGGTGCTAATTTGTGTCCTTTGGCTCACAATATCTCCTCCTTTCCCCTTCAAAAACCTAAATCACTACAAGGAAAAGATAATTCTGGAATGTCATTTGGGCTCAACCATAGGATTCTGGGCTGTGCTGGGTTATATAGgacttttggctcttttatgttttgttttggctttTCTGGCTCGGAAGTTGCCTGATAATTTTAATGAAGCTAAATTCATTACGTTTAGCATGCTCATATTCTGTGCAGTTTGGATCACTTTTATTCCAGCTTATGTCAGTTCACCTGGGAAATTTACTGTAGCTGTGgaaatatttgccattttggcatCAAGCTTTGGTTTGTTATTCTGTATCTTTCTTCCAAAATGTTACATAATTATACTGAAGCCagagaaaaacactaaaaagcaAATTATGGGGAAAATACCAGTTAAGTAAGCTAACAGTCCaaatgttattcattaatatggCATGTAAAGCATATAACTAGGTAACTATAACTGAACACACTGGATATTTTAACATTAAGATCTGTTCTGTACCTTTTATTCACGTAATAATGGCTCATTGATATAGGGCATCCAccttaataatgataatattccattttaaaatgtttcttttgtaTCATTTTCCAACAAATTCCCATACTGTGAAGTATGTAGCACAAGCACCATTAACATAAAAAGATtgattgaatgaataaatgaatgaatgaatgaatgaatgaatttttaatacatttaaacttGTGAATTATGAATATATGCAGAATCCCAGGGTACAAaacaaatgtatataaaaacCCATATCTCTTGTATCAGCACTGAATTATGGCCAAGTGTAAAATCTACAGCTAGTAACACAAGCTGATTTGGAAATCAAAGACCATGGAGGGAGATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578376.1 lncRNA downstream 37648 4231460 ~ 4231831 (-) True LOC117597614
TU111372 lncRNA downstream 51637 4217578 ~ 4217842 (-) False LOC113534736
TU111366 lncRNA downstream 85486 4183755 ~ 4183993 (-) True G93716
TU111360 lncRNA downstream 97167 4172073 ~ 4172312 (-) True G93710
TU111357 lncRNA downstream 113982 4155257 ~ 4155497 (-) True G93707
TU111413 lncRNA upstream 272772 4546439 ~ 4546705 (-) True G93753
TU111561 lncRNA upstream 510258 4783925 ~ 4785131 (-) True G93896
TU111595 lncRNA upstream 619919 4893586 ~ 4894074 (-) True G93926
XR_004578349.1 lncRNA upstream 692967 4966634 ~ 4971603 (-) True LOC117597587
TU111675 lncRNA upstream 733758 5007425 ~ 5011433 (-) True G93988
XM_034305537.1 mRNA downstream 38162 4226231 ~ 4231317 (-) True LOC117597613
XM_034305535.1 mRNA downstream 38163 4226231 ~ 4231316 (-) False LOC117597613
XM_026927690.2 mRNA downstream 48872 4217018 ~ 4220607 (-) True LOC113534736
XM_026927691.1 mRNA downstream 74427 4191685 ~ 4195052 (-) True LOC113534737
XM_034305341.1 mRNA downstream 120069 4143231 ~ 4149410 (-) True LOC113534616
XM_034305425.1 mRNA upstream 20388 4294055 ~ 4297771 (-) True LOC117597581
XM_026927598.1 mRNA upstream 55550 4329217 ~ 4332931 (-) True LOC113534650
XM_026927564.1 mRNA upstream 67899 4341566 ~ 4344946 (-) True LOC113534639
XM_026927660.1 mRNA upstream 81000 4354667 ~ 4358066 (-) True LOC113534706
XM_026927530.2 mRNA upstream 97707 4371374 ~ 4374959 (-) True LOC113534610
TU111361 other downstream 95885 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 737788 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1501181 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1518310 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2500684 1768405 ~ 1768795 (-) True G92531
XR_004578382.1 other upstream 218879 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 1920408 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2591601 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2874277 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 3168706 7442373 ~ 7614096 (-) False shank3a

Expression Profile