RNA id: XM_034305116.1


Basic Information

Item Value
RNA id XM_034305116.1
length 2798
RNA type mRNA
GC content 0.39
exon number 12
gene id si:dkey-30c15.2
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30792940 ~ 30804496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttattattattattattattattattattattattacacactgcGGTGAAGGACATCATCCAGAAAAACAATCAGCCCCCAGGTGAAGGAGCGCGTTTTATTCCTCCAGACTGAGTGGATTTGGAAGATGAGATGAAGATTTATGGaatatttctttacttttaattctctggactttttttgttgttgattcaGCGACATGAACTCCAGCAGCGGATTATCAGACCGAGAGctcaCAGCTCTCTCTTCCGTGTACGTCTCCTGTCTCAGCTTAAGtttaattgGGAGCTGCTCTGTTTTCATCGCATCGATtgtaaagagaaaaaagctCAATGAACAGgcgaAGCCTCTGATCCAGCTGGCTCTAGCGGACCTGCTGgcgtctctctgcctctccatcACGGCTCTGCTGAACTTCCTGTCGGCCGGAGCGGTGCGGAGCAGTGAAGTGGTGTGCAGCGCAGGATTAGCTCTGTCTCTGACGTTTTATTATgtctctttcctcctcctcgtcGTTTATGCCTGTGAGTCAGCACACAGCGTTcagggatggagggaggaagATGAGAGAAGGTTCACACATCAGGACAGCAGGCGGAGGAGGAGGCTGATCGATCTGCTGTACGTGCTTGTGTGGACGGTACCAGTGATTGGATACGTGATCTACATCGGGACTGTTTCTTTTCCTATGATGTCTCTAATACCATCACATCAAGCCTCCAATTATAAACAAAGTGTTTGGCCCAATGCTCGCTTCTgcaacagTTGTATTCTGTTCCTCCACCTGCACATCGATGATAATGAAGTCTGTTCCACTGTGgatttaaaacatattaagtATATCAAGATTTTCACCTTTACAAGTGTGCTGTCTGTCCTCATCTGCTGTactTTGATGTACTGGAGGCTCCAGGTCAAATTGAGGCGTTATGACCAGGGCGGTGTGAGGCGAGCAGAGAGGATCTGGTCCTCGGCCAGGTACATGATCCTCGTCATCGTCCTCTGCTGGACTCCGGctcttgTGCTGATTGGTTTCTCGTTCGCTTGCTCTGAGACGGAGAGTTTGTTTCCTCTTTTCAtcatacaggctgtGTCAGTCTCTCTACACGGTTTCCTCAACAGCATCGTCTATGCCTGGAGACGCCGTAACTTCCGAGAAGCCGTGCTCGGGGAGAGAATGCCTCTGCTTTCCTACACACACCGAGCTTTCTTTGACCAATCGCTGAGAAACGATGcagaggaaacaggaagtggagagAATTAAATTAATATCAGACATCCAGAGACTAGTTACATTCATGAAGCACAAATGAACTCACAATGCAAGAAGCAGAGCACTTCTTAATCATACTGGAGGGATCTGATGAAAATGACACTTTGGTGATTTATTACATCTGCATGAACTTTTGAGTCTCAAGGTGGCAAAACTTATTTCAAATTTGTGATAGATattgaaattacacacatcggAATTCAGACTCGGACTTAAATGATCTCTTAGGAAGTGTAGATTTCTTCAATAAAGGaaaagttatttaacatttctcattatgagattgttatataacaaatagAAAACCATTAAGCccatttctagacatatttactaattaaaAACTCTTCTAACCCTAGAAATAAACACCTGAAATAAGTCATACATTATAATTGTAAGTTATCAGTGATCTGCGAATAGAATAAGATCATTTAAAGCTTGAGTCGCACTATAATTgagtaaaaatatctagaaataggattaataatgtgatatttgtttaaaaacaaagaaagagaaatattagttaaATTTCGGCCatgttcaagatattttttGTTGCGTAGAGATCATTATTTGCAGTGCAGCGATATTCAGAAGTAACACatggggcggagtttgtctaaaacagaggcgtgtctcagttacgcaTGATTCTGACCTGAAGTTGATATTTCCTGTGTGATATCAGCTCGAGCGATTAGCAGGAGTAAAGCAGGCGCATATGTGAAAAACTCCAACCTCAGAGgcgtgaactacacgcaggCGATTTTAATAacctgaatgtggagctcagaaacagccgcgtaacccgactctgaataccagcaactttccccatgtaaatacTGACGTAACTTTTGAACTGAATTCGCCGACTCTGATTACGGCTCTGAGGTGGATACCGAGTGTGAATGAAGTATTTAAAGATAACAGCAGACTGAGTTTGGCTGTATacgtgttaaaaataaaatatgaggcaccttttttttttgtattttatctgGAATGTTTTTATCCCTCTGCTGCGTaagttatattaatgtttttgatGTGTACAGAATAAATAACCTGATATTAAACTTTAACATGCAcatttgatagatagatagatagatagatagatagacagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataaagggCATTTATTAGCAAACAGGTAGGAGTAAGATTAAAACAAATGGAGTATATTTTCTAACATATagtaatgttatattttttcctGCTCATGCATGTGAACTTatgttaatttaattgttttatctgaagtgtgtattataaaaacagacatatgtgtgtgttatatttttatgcaCTAAAACTCAAGGCACCTTTCACatttcaggaattttttttttttgcatttctaaCATGAATGATCCATTCCGTGACTGATATGATGTGAATTGTTCTTTGGCTTTTATTCTGTTATGTAACAATGACCCAGTGAAATATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402799.2 lncRNA downstream 77487 30714118 ~ 30715453 (-) True LOC113526678
TU127103 lncRNA downstream 323037 30443523 ~ 30469903 (-) True G107550
TU127127 lncRNA downstream 369602 30421252 ~ 30423338 (-) True G107574
TU127088 lncRNA downstream 385976 30368887 ~ 30406964 (-) True G107536
TU127085 lncRNA downstream 423752 30368338 ~ 30369188 (-) True G107533
TU127460 lncRNA upstream 6551 30811047 ~ 30826087 (-) True G107800
TU127464 lncRNA upstream 14710 30819206 ~ 30820422 (-) False G107803
TU127466 lncRNA upstream 16213 30820709 ~ 30822357 (-) True G107804
TU127468 lncRNA upstream 23655 30828151 ~ 30829653 (-) True G107805
TU127470 lncRNA upstream 31138 30835634 ~ 30884613 (-) False G107806
XM_026913544.2 mRNA downstream 32761 30756449 ~ 30760179 (-) True pdp2
XM_034304940.1 mRNA downstream 37850 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034304939.1 mRNA downstream 37850 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034304938.1 mRNA downstream 37850 30740467 ~ 30755090 (-) True si:dkey-30c15.10
XM_026913941.2 mRNA downstream 60881 30728044 ~ 30732059 (-) True bbs10
XM_034305072.1 mRNA upstream 41541 30846037 ~ 30849697 (-) False selenot1b
XM_026911251.2 mRNA upstream 45908 30850404 ~ 30857147 (-) False LOC113524884
XM_026911250.2 mRNA upstream 45908 30850404 ~ 30857147 (-) True LOC113524884
XM_034305071.1 mRNA upstream 45908 30850404 ~ 30854568 (-) False LOC113524884
XM_034305070.1 mRNA upstream 53433 30857929 ~ 30898090 (-) True ppp1r37
TU127397 other downstream 60909 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 448064 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1078948 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3635800 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 4184611 26569085 ~ 26608329 (-) False LOC113526510
TU127465 other upstream 12083 30816579 ~ 30819614 (-) True G107803

Expression Profile