RNA id: XM_034305121.1


Basic Information

Item Value
RNA id XM_034305121.1
length 2057
RNA type mRNA
GC content 0.52
exon number 10
gene id homer2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1056705 ~ 1074903 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGATCCgagcaacacacactctttctcacacacacacacacacacacacacacactcgcgcgcgCAGTGTGAGGATCAGAAGTGCTTCGGTTCATGACGATCGGGTTTCAGTCTCGGGGCCTGAAATGGAGTCGGAGCggagctaacacacacacacacacacacacacacacacacacacacacacacttccatacacttatacactctcacacacacacctcaccctCATAGCGCTCAGTTTTCCGACGCGGATCCACGGCCATGggggagcAGCCGATCTTCACCACTCGAGCTCATGTCTTCCAGATCGATCCCACCACCAAGAAGAACTGGGTTCCTGCCAGTAAACAAGCCGTCACCGTGTCCTACTTTTACGACAGCACTCGCAACAGCTATCGCATCATCAGCGTGGacgggtcaaaggtgatcATAAACAGCACCATCACCCCCAACATGACCTTCACAAAGACGTCACAGAAGTTCGGCCAATGGGCCGACAGCCGCGCAAACACCGTGTTCGGTCTCGGGTTCGCCTCTGAACAGCAGCTGTCCAAGTTTGCTGAAAAGTTCCAGGAAGTGAAGGATGCGGCTAAAATGGCAAGAGAGAAATCACAGGAGAAAACAGATGCAGCCAGCATCCACTCACAGGAATCTGGCCGCGAGACTCCACTGTCCAATCAGGCGTCGAGTATGAATGGTACAGACGATGACAAAATCTCACACCCACCTGATAACACGGTGCTGATGAGTGAGAACAACCGACTGAAGTCTGCTGTGGagcagagtaCTAACCAGTATGAGTCGGAGCTGCAGGCTCTGAAGGAGAGTAACGCTCGGCTGATGGAGGCTCTGCAGGAGGCAAACAGCAGTGTGGAGAAgtggaaaacacacaccagcGCATGCCAGGAGGAGAACACCACACTCAAGAacaagattgcAGACCTGGAGGCGGTGTGTAAAGAGGTGAatcaggagaaagagagaaacgcTCAGCTCAGTACCCGAGTGCAGAAACTTGAGAACGAAATAAAGGACAAAgagcaggagCTTGAGAATCTGAGGAAGCAGGCTGAGATAATTCCACAGCTCATGTCCGAATGTGACAACCTCAACGCCAAGCTACAGGCGGCGGAGCTGGCCAATCAGGAGGCTCGTGGGCGTGTGTCAGCGCTGCAGAGTGAGGTGAGTGAAGGACAGCAAAGACAAGGAGCCATGAAGAAAGAGCTGAAGAAGTTCATGGAGCTTCTGGAGGGCAAGATAGACGAACTGCACGAAGTCCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacagacacacacacacacacacacacacaccccgagtTCGCCAGGGACTGTCTCACCTGGGCATGGACAactaacacagacacacacacacacacacacacacacagacacacacacacacagacacacacacacacagacacacacacacaccacacacacaccccaagtTCGCCAGGGACTGTCTCACCTGGGCATGgacaactaacacacacacacacacacacacacacacacacacacacacacacaccccccgaGTTCGCCAGGGACTGTCTCACCCGGACATGGACAActaactcactctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacagaatccgCCAGAGACTGTCTCACCCAGACATGGAcaactgactcacacacacactctctctctctctcttacacacacaatatagcATCTCAATATCTAGGGAGTGACAGCCATAAATCCTTATATTACAATATTGTatgtaatataacataataatgtacttatatctcacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109728 lncRNA downstream 40523 1014447 ~ 1016182 (-) True G92359
TU109711 lncRNA downstream 72184 982501 ~ 984521 (-) True G92343
TU109605 lncRNA downstream 80156 970248 ~ 976549 (-) False G92282
TU109649 lncRNA upstream 75530 1149539 ~ 1216437 (-) True G92294
TU109581 lncRNA upstream 123150 1197159 ~ 1292493 (-) False bloc1s6
TU109792 lncRNA upstream 214692 1288701 ~ 1295898 (-) True G92412
TU109844 lncRNA upstream 262882 1336891 ~ 1341381 (-) False G92421
TU109845 lncRNA upstream 262882 1336891 ~ 1341381 (-) False G92421
XM_034305119.1 mRNA downstream 438 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA downstream 15288 1034949 ~ 1041417 (-) False LOC117597537
XM_026913982.2 mRNA downstream 209778 835116 ~ 846927 (-) True slc27a2a
XM_034305179.1 mRNA downstream 254493 782910 ~ 802212 (-) True usp8
XM_034305206.1 mRNA downstream 356928 695169 ~ 699777 (-) True mibp2
XM_026914301.2 mRNA upstream 8687 1082696 ~ 1085313 (-) True LOC113526880
XM_034305472.1 mRNA upstream 29942 1103951 ~ 1116054 (-) False hdgfl3
XM_034305471.1 mRNA upstream 29942 1103951 ~ 1116054 (-) True hdgfl3
XM_034305508.1 mRNA upstream 51622 1125631 ~ 1149797 (-) True bnc1
XM_034305212.1 mRNA upstream 123126 1197135 ~ 1201725 (-) False bloc1s6
TU109708 other downstream 67649 982067 ~ 989056 (-) True G92340
TU109707 other downstream 67649 983467 ~ 989056 (-) False G92340
XR_003402800.2 other downstream 209770 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 309175 707760 ~ 747530 (-) False G92240
TU109527 other downstream 346051 706750 ~ 710654 (-) True G92240
TU109770 other upstream 148712 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 441729 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 553792 1627801 ~ 1644217 (-) False sema6dl
TU109968 other upstream 554620 1628629 ~ 1648286 (-) False sema6dl
TU109993 other upstream 694396 1768405 ~ 1768795 (-) True G92531

Expression Profile