RNA id: XM_034305132.1


Basic Information

Item Value
RNA id XM_034305132.1
length 4606
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC113534715
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4785197 ~ 4841034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGGGTGCACGAGGCTCCTCCGCACAGAGCTGCGCGCGAGGATGTGGAGTAAACACAGTGGACTCTGCTGAATTGGGGATCATTAGCGTTGAGTTTTTTAAAGCACCAGCAGCACTTACACACAGGGAGGATACTACCCGAGCTGCACGCTGAAACAGGATTATGAGCTGATCTGAGCTACGGGtgctgctttaaaaaagaaaaaaagtgcactTAAAGTGACCTTGCTATGGATTTTAGCAACGAAGTCGATctttccaacaacaacaacatgagCAGCAACATCATCGCTCCTCTGTGGAAGAAGCGTGCCACGGACCAGGTCTCGAATGGCAACCTGAAGCCCAAACCAAGACCTTTGAGTTATCAGATTGACGGTGTCCTTATGACTGATTTCCCCGTGGAGGACAAGTGCTCTTTCACCCtcacacaacctgcagagacGATCACCACTCCACAAGGAACCATGGTGATCAAACATGTTTTGAACAAACCTGCCCGTAAGACTCGTGTTGTAAGGAGCATTAGCATTGGGCATCTATCCAGTGCAAGCTTTTCTCTGGCTAGGTTCAGATCAGAGAATAATAATGACTCTGTGGACAGTAACCAGGTGCCTAAAACCAGCCTATCTACAAAAACTGCAAATGGCTTGAGCAAAAATGAGACCAAAAGAGATCATGATCCTCTAAAGCGCCTGTCCAACCCATTTACCCTCATCTCCCAGAGGGAGCAGATTGTTTTTGGGGACTCGTCCCCAATATCAGATAAGCAAACCCCACAGAAATCTAGCTCTCCCTCCTGGAATTCCCCTCAGCAGCTCTCTTCTCCAGTTGCTCTTCAAACTTcttcatctcacagctccatgtcCAGCATGCCTTCCCTCTCTTCTtgttcttcctcctcctcctccgttCCCAGCACACCATCCGAGCCCTTTACCCCTCAATCTCTGTCTCCATCCGAAGACAGCACAGTAACTCCAGTTTCACGCCGGTCCTCAAGCTCTTCCCAGGGGTCGGAAGTCAAGTCACCTCTTCCCAGCATGGTCCTCAGTACGCACAGCCCCGCTGCATTGAAGATGGGCACCCAGCAGCTCATTCCTCACAACCTGGCATctgaaaaaagaccaggcaaaATCAGCCAATCTGGGGGACTGCTAGACCCTTCCAAACGTTCCCAGCGTGCCCGCAGCATGGTGGAGAGTGGCTCCTTCTTCTCCAGCAGTAAGGATGTTGAAGAGACGGAGGATGCGCCAGGGCTGTTCAGGAGGGGTCTAAGGTCCACGTCATACCGCCGGGCTGTGGTCAGTGGTGTAGATCTGGACGTCCCTTCTAACCTCTTAAAAGGGGTCGCAGAGCTGAAAGAAGGATCCAGGAGTCCACGACCCACCAAAAGCAAGAgtggagagaagaagaagaagaaactacAGACCCAGAGGACATTTGACAGTGAAGAAGATGAGGTTCTGTATCAGAATTACCAGGAGAAGGCACTGCACAATGACTCGGATGAGGATGCTGAGTCTAGAGAGCCCAAAGCAGACGAGCACATCGTGGTGCAGTACAAACCCATCCGGACGTCCTGGAGTCAGCTCAGTGTGGTTAAAAAAAGTGGAGTGTGTGACAGGCTGAGCCAAGAGGAACGCAAGAGACAAGAGGCGATATTCGAGGTGATCTCATCAGAGCACAGCTACCTGCACAGCCTCATGATCCTCATCCGCCTGTTCAAGAACTCGCCAGAACTCAGCGACACCATGACCAAGACGGACCACCACCACCTCTTCTCCAACATCGTGGATGTGTGTGAGGCCAGTAAAAAGTTTTTTAAGGAACTGGAGGACAGACACCAGCAGAATATCGTGATCGATGACATCAGCGATATTGTGATCAGACACGCCCAGGCAAACTTCGAACCCTACGTGACATACTGCTCGAATGAAGTGTACCAGCAAAGAACATTCCAGAGACTAGCAAATAAGAGCCCGACCTTTAAGGAGGTTCTGTCGCGGATTGAAGCTCACCCGGATTGCCGAAACCTTCCCATGATCTCTTTCCTGATTCTGCCCATGCAGAGAGTCACCAGGCTTCCTTTACTCATGGATACTATTTGTCAGAAAACACCTAAAGACTCTCCTCAGTATGACGCATGCAAGAAAACTCTTCAGTCCGTCAGCAAGCTTGTACGGAAGTGTAATGAAGGCGCTCGTACAATGGAACGGACGGAGATGATGTACACCATCAACTCTCAGCTGGAGTTTAAGATTAAGccgtTCCCGCTGGTGTCGTCCTCTCGCTGGATGGTGAAGCGTGGTGAGCTCACGGCCTACGTTGAAGAGAGCGGGATCTTCTCCAGGAAGACGACACGGCATCAGGTCTACTTCTTCCTCTTCAATGATGTCCTCATCGTCACCCGCaagaagagtgaagaGAGTTATACGGTGATAGACTACGCTCTGAGGGATCAGATCTGGGTGGGGCCGTGCCAGCTGGAGGATCTGAACCTCTCGCCAACACGCACCACCTCAGGCATGCTGACATCACGGCAGGTCGGAGCCAATCACCTGTTCCACCTCAAATTCCGCAGCAACCACTCAGGAGACAAAGTGCCCatgatcctgggggcggagcttctTAATGAGCGTGCTCGCTGGATCAGTGCACTGGGACACACTAACAATGAGAAGAGGAACGCAGACAGAACAAattcCATGCAGGTGGAGGTGATTCGTACGTACACGGCTCGGCAGCCTGATGAACTCTCGCTGCAGGTGGCAGACGTTGTAATCGTCTCACAGACAGTGGATGATGGTTGGTACGAGGGCGAGCGATtaagagacggagagagaggcTGGTTCCTCGCCGAGTGTGCTCAGCCAATCACCTGCCAGGCCACCATTGAGAAGAACATGCAGAGGATGGACCGCCTCCAGGGCCTGGAGACCAACGTTTGAGCGGGATTCTCTACAGTTCctccctaaacacacacacacacacacttacagagaGAACGCTGGCCTGAGGCTCACTGCGAGATGATGTTATTGATTACTGGGACTTGATCGTGGAGCTCCTCATAGGAGCGAGCAGAGACTTCTAATAAAATCTCGACAGGACTGGAGACCGGTTCTTGGAAGAACATGTGGATAAACCAATGCGGTTCCAGGAGGAACGGTTAGAGATTCTTTAAACTCACTCTAGCACAGGGGTGTCAAACATACAGCCCGAGACCTGGCCTGGCTCTAATCTGGCACACTGAATGAATTTAGTCTAAATGAAAATCACTTTCTGGACTGCAGATGAATTGAAAGATTGAAAAAAGagtctgttattccactagggggcagaatAGAGtaataaactcagctactgacaaaaAGTGCCAATGATTCTTTATTCACAAACtaaaaaatagattttgaaCTAATTttggggtttcacagcaatgggggtgaatactatTGCACactaatacttttttatttgtatataattttgcaaactatatttattttcactccATTTCAATATTCTGGGGTAATTTATGTAGATTCAGGACATACAATCCTAATGAAGTCTAaatcagttccaggttgtaacaatacaaattgtggaaaaattcagggggggtgaatacttacgcaaggcACTGAAGACGTTCAGAAGGAACTGCTCGATGTGTTATTGGTCACTTTTTCCATCTGTCCCACTTccctaaaatgagtttgacacccctgagCTAGCACACGTGATCTCAGACCAGCTTAACGTCCAAGGACTGTACAGCAACCAGAAGATTCCGGATTGATGTTCCTCACCCAAAAATGCTAACCTGACTAATGCTGAATCACCGCCAGCAAAAGCTAATCACCATCACACAGCTCAAGATCCTGTTAAATGCTCCTGCTGGCTTTCATTCACTGTTGGTTATGTAAGCATTCATTGCACTTGCCATGTCAATAAGCTTTTCATTTCcataacacaacacagcagAAACAGCACAAAGGACAGTTTTACCTTCACAACTCTGCAtgtgtgtcagtcagtctgtaTATAAGCAAGTTGTAAATAAATCATGAGAAGATTTAAGGGCTCAGGGAAGGTTTGTAgtttaaaagtataaatatatgtatatacactcaaCCTATGAAAGGCTCGAGTGGCGTACTTAACCAACAGCAATTTGCATAAATTGTCAGGAGCTCGGAGCAGGACGATGAGCTGCATGGTGTATAAATCTCTTACATAACGGCTTTTATCTTCCTAAAGATCAAACGCTGCACTTCAGCTCTCTGTTTATCAAACTGGAAAATATGCAGACTTTCATGTGGTTCAAAAAGTGACGCTGGTTCAGATGGATTTGTCACTGAAGATACAGAATGcagcttcagaaaaaaaaaaaagggattttaaaatgaaggaaTGTTTCGGTCTGAAACGAGACGCTTTTCAATCAGATTTGGGGCAGAACTGGGGCTCAGGGAGAAGAAACACACGCTATGAATGGTTTGTAAATCTAATGTAAATACTGTATCAGATATAACCTCAGTGTGATCCTGTAACTAATCAACAAACGTATATATTCCATAAAGGTTTGGGTTTGTTTCA

Function

GO: NA

KEGG:

id description
K13744 ARHGEF26, SGEF; Rho guanine nucleotide exchange factor 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111561 lncRNA downstream 66 4783925 ~ 4785131 (-) True G93896
TU111413 lncRNA downstream 238492 4546439 ~ 4546705 (-) True G93753
XR_004578376.1 lncRNA downstream 553366 4231460 ~ 4231831 (-) True LOC117597614
TU111372 lncRNA downstream 567355 4217578 ~ 4217842 (-) False LOC113534736
TU111366 lncRNA downstream 601204 4183755 ~ 4183993 (-) True G93716
TU111595 lncRNA upstream 52552 4893586 ~ 4894074 (-) True G93926
XR_004578349.1 lncRNA upstream 125600 4966634 ~ 4971603 (-) True LOC117597587
TU111675 lncRNA upstream 166391 5007425 ~ 5011433 (-) True G93988
TU111702 lncRNA upstream 235106 5076140 ~ 5179801 (-) False G94010
TU111703 lncRNA upstream 235106 5076140 ~ 5179801 (-) True G94010
XM_026927227.2 mRNA downstream 107837 4642261 ~ 4677360 (-) True LOC113534432
XM_026927724.2 mRNA downstream 150440 4630852 ~ 4634757 (-) True LOC113534774
XM_026927677.2 mRNA downstream 182236 4597574 ~ 4602961 (-) True LOC113534721
XM_026927678.2 mRNA downstream 191162 4589186 ~ 4594035 (-) True LOC113534722
XM_034305162.1 mRNA downstream 207625 4569303 ~ 4577572 (-) True LOC117597542
XM_026927337.2 mRNA upstream 87306 4928340 ~ 4930720 (-) True LOC113534489
XM_026927814.2 mRNA upstream 131974 4973008 ~ 4976264 (-) True p2ry1
XM_026927773.2 mRNA upstream 244240 5085274 ~ 5107393 (-) True LOC113534806
XM_026927159.2 mRNA upstream 513587 5354621 ~ 5372127 (-) True ulk3
XM_026927723.2 mRNA upstream 568533 5409567 ~ 5414923 (-) True larp6a
XR_004578382.1 other downstream 292458 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 611603 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 1253506 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 2016899 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 2034028 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 1353041 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2024234 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2306910 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 2601339 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 3627267 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile