RNA id: XM_034305154.1


Basic Information

Item Value
RNA id XM_034305154.1
length 5764
RNA type mRNA
GC content 0.47
exon number 48
gene id si
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22231448 ~ 22306769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGACTATCCTCCACTAAAGGAGCTTTAGAAGTCCAGGAGGAGCTCTCAGGAGAAACCGCTTCCTTCTTGTGTGGATTGCTGTGAGGAGTTACAAGCACAGCAAAGGGAACAGCAAAGaTGGGGAAGAAGAAGTTCTCCGGGTTAGAGATAACCCTGATGGTGTTGTTTCTCATGATCATGGTTGTTGCCATAGTACTGATCGCCCTGATTGCCGTGAGAACAGATGAGACAACAACGAcacCATTTGTAGCGCAGTGTCCAGATATTGCCCTGGCTGAAAGAGTGGACTGTTTTCCAGATGCGGGTGCCTCTCagCAAAGCTGTCAGGATCGTGGCTGCTGCTGGAGTCCACATGATCAAACAAACGTTCCTTGGTGCTTCTTCTCTAGCAATCATGGCTACACTGTGGTCAGTGAAAATCAGCCAAGTAGTACAAAACTGGAGGCCAGACTGAAAAGACAGGACGCACCGTCTCTGTTTGGCTCTGACATTCTTGAGCTGTCCTTCGTGGCAGAAATGCAGACAGAAAATCGCCTTCGATTCAAGATCACTGATGCAAATAATGCCCGGTTTGAAGTTCCTCAGGAACACGTCCAGtctctgtccagctctccaAATGGACCACTGAAGTATGAGTTTGAGCTTCTCAAGAGTCCATTTGGAGTGAGAGTCCGCAGAGCGTCCAACAAAAAAGTCctCTTTGATACCAGTATGGGACCGCTGGTTTTTGCTAACCAGTACCTGCAGCTCTCTGCCAAACTCTCTTCGGATAACATCTATGGACTCGGTGAGCACGTCCACAAGCAATTTCGCCATGACCTTGACTGGAAGACGTGGCCTATATTTACACGAGATTCCTTTCCCAATGGTgGTACTCACAACCTGTATGGTCACTACCCCTTCTTCATGTGCCTGGAGGATGAAAGTGGCAAATCCTTTGGTGTTTTCCTAATGAACAGCAATGCAATGGAGGTGACTTTTCAGCCAGCACCTGCGGTGACCTACAGAACGATTGGAGGAGTTCTGGACTTTTATATCCTGATTGGCGACACACCAGAGGCTATTGTACAGGAGTTCACAGAGCTGGTTGGCAGGCCAACTATTCCTCCATATTGGGCTTTCGGTTTCCAGCTCTCTCGCTGGGACTATGGCAGCCTGGAAGAAGTAAAGAATACGGTGGAGAGAAATCGAGCAATTGACCTTCCTTATGACGTGCAGTACACAGATATAGACTACATGGAGGACAAAAAGGACTTCACGTACGACTTGGTGAAGTTCAAAGACCTCCCACAGTTTGCTGACTACATGCATGCAAAAGGACAAAGATATATTCTCATATTGgaTCCCGCCATAGCCACGAGCAAGAGAATCAACGGACCATACGAGTCACATGACAGAGGAACGCAAGCTGATGCATGGGTCACTGAGGCAGATGGAAAGACTCCACTAGTGGGAGAGGTTTGGCCTGGAGAAACCGTGTTTCCTGACTACACCAAGCAATCCTGCATCAAGTGGTGGGTGGATGAAATAGTCCGGTTCCATAATCAAGTGAATCATGACGCAATCTGGATTGACATGAACGAGGTGTCCAGCTTTGTGCCAGGCTCCAACAAAGGATGCGCTGATAATACGTTGAATTATCCTCCATTCACTCCAAaCATCCTTGATAATTTGATGTACAGTAAGACTTTGTGTATGGATGCAAAGCAGGCCTGGGGGAATCACTATGATGTTCACAGTCTTTACGGATATTCCATGGTGCTGGCGACAGAAGAGGCCGTGAGGCAAGTCTTTGGCAGCAATCGCTCATTCATTCTCACTCGCTCCTCTTTCCCTGGAGTGGGAAAGTATTCAGGCCACTGGCTGGGTGATAATGCTGCCAACTGGAATGATATTAAATGGGCAATACCTGGCATGCTGGAGTTTAACCTATTTGGAGTGCCTTATATTGGTGCAGATATCTGTGGCTTTTTTGACGACACAACCGAGGAGCTGTGCACACGCTGGATGCAAGTCGGAGCCTTTTATCCTTTTAGTCGTAACCACAACGCCCAGTACTACAAAcctCAGGATCCTGCAGCTTTTGGTGCCAACTCTGTGCTAGTGAGAAGTTCCAAACACTACCTGAACATCCGCTACACACTCCTGCCGTACCTATACACACTCTTCTATAGGGCTCACGTGAGTGGGGACACCGTGGTGAGACCCGTCATGCATGAATTCTACTCAGACCCTGCAACATGGACAGTGGATCGTCAATTCCTATGGGGAGCACATTTGCTTATTACACCTGTACTGGATgctGGAGCGGTCACAGTGCAAGCATACATTCCTGATGCCGTGTGGTACAACTATGAGAcgGAAGAGAAAATCAAGGAGCGTAAACAAAGCGTTGAACTGTCACTGCCGCTAGATAAGATGGGTCTTCATATCAGGGGAGGAGCCATTCTGCCAATCCAGAGAACTGCAGTCACTACTGTGTATAGTCGGCGTTCTCCTATGGGCCTGATCATTGCACTCGATGACAACAACCAGGCATCAGGCGAGCTGTTCTGGGATGATGGAGAGTCTCGAgacACTGTTTCATCTGGGGCCTACATCCTTTACCAGTTCTCCGTTGTTCAAGGAGTGCTGACCATGCAGGCTCTCCACAGTGGCTACTCTGATCCAAACAATCTGGTGTTTGAGAACGTCACCGTTTTAGGACTGAGCATCCCCCCCACAGCTGTGACCATCAATGACGGTAACGTGGTCAGTGCCTTGCCGGAGTCCAGCATTAATTATGACTCAGTGAAGAAGGTGCTGTATCTGAAGAATCTCCAACTGCAACTGGGGAAAAATTACACACTCACCTGGAATTCCGTTGTTGAAGACTTACAGCGGTTTAACTGCCACCCTGAGGAAATGGCCACTGAAAATTCTTGCACAGAAAGAGGCTGCATCTGGGCGCCATCAAATCTGAATGGTGTGCCATGGTGTTATTTCCCCATGGATTACGGCTACATCTCTGATCCTGCAGAGGAAATGCCAAGTGGATGGAGCTTTAATATCAGGCGGAATGAAAAATACCCTGCTCCACGTGCTTTATCCAAAGACATCAACACACTGAAGGTGGAAATCACATATCTGAGTGGACACTCCCTACGGTTTAAGATCTTTGATCCGGCTAATAAGCGTTATGAAGTTCCTGTTCCTCTTGATTTACCATCAACACCAGAGCTACAGGAGGATAAGAGGCTGTACACAGTGAATATCACACAGCAACCATTTGGTATTCAGGTGATCAGGAAAAGCACAGGAACCATCATATGGAATTCGTCTCTTCCTGGCTTTATTTTCTCTGACTTGTTCATACAAATCTCAACTCTACTTCCATCACAATACATCTATGGCTTTGGAGAGTCTGAACGTCTAAGCTTTAGACACAACATGAACTGGCACACATGGGGCATGTTCTCTAAGGACCAACCTCCAGGGTATAAGCTGAACAGTTATGGCGTGCATCCCTTCTACATGGGCCTGGAGCCGAGCGCTCATGCTCATGGAGTCCTGCTGCTCAACAGCAATGCCAtggATGTGACAGTTCAGCCGACGCCTGCTCTCACTTACCGCACCATTGGCGGGATCCTCGACTTCTACATGGTGATGGGACCCACTCCAGAACTGGTGGTACAAGAATACACTgcgATGATTGGTCGCCCAGTTCTCCCAGCTTATTGGTCTCTGGGATTCCAGCTTTGTCGCTATGGCTATGTTAACGATACAGAAATCGAAGAGCTTTATGCTGATATGTTGAGCGCCAATATTCCTTATGATGTGCAGTATGCAGATATCGACTACATGGAGAGGCAGCTAGACTTTGTGCTCAATAAGAACTTCGTCAACCTTCCTAAACTGGTCGAAAAAATGAGAGGGGAGGGCATGCGCTTCATCTTCATCCTGGATCCTGCAATTTCAGGCAATGAGACCAATTATCCTGCCTTCGAGCGTGGTGTTCAAAATGACGTGTTTATTAAATGGCCAGCTGATTTGGATGACGGCATCGTCTGGGGAAAAGTGTGGCCTGACTATCCAAATGTCATCGTTGATACCTCTCTGGATTGGGAAACACAAGTAGAGCTGTACAGGGCCTATGCAGCATTCCCAGACTTTTTCCGGAACACTACAGCAGCGTGGTGGCAGACAGAAATCAATGACTTCTATACAACGATGCGTTTTGATGGCCTGTGGATTGACATGAACGAGCCAGCTAGTTTTGTCGATGGCACTGTTGGAGGAAAATGTCTAGGCCCAGAAATCTATGAAAATCCACCATATATGCCACCACTGGAGTCTAAACAAAAAGGGCTGAACCACAAAACCCTCTGTATGAACAGTCAGCAATTTCTTGCTGATGGCACTCCGGTTAAACACTACGATGTGCACAACCTGTACGGCTGGTCTCACACCAAACCAACTTACGAtgcctTGCTGAAAGTAACAGGGAAGAGAGGAATCGTGGTGACTCGCTCGACATACCCGAGCAGTGGGCGATGGGCAGGGCACTGGCTAGGAGATAATACGGCTGCCTGGGACCAACTCTTCAAGTCTGTAATAGGAATGATGGAGTTCAGTTTGTTCGGAATCTCTTATACCGGAGCTGATATTTGTGGGTTCTTTAACCATGCCGAGTACGAGATGTGTCTTCGCTGGATGCAGCTGGGAGCATTTTACCCATATTCCAGAAATCATAATGGCAAGGGAAGCCGGAGACAAGATCCAGTGGCGTGGGATGATGCATTTGCTAACGCATCTCGTGACGTGCTGAACATCCGCTATACACTCCTCCCCTACCTGTACACACTCATGTTTGAGGCTAACACTAAAGGCAGCACTGTGGTCCGGCCTATGCTGCATGAGTTTGTGGATGATAAAGAGACATGGGACATTTACAAACAGTTCCTGTGGGGTCCAGCACTGCTCATCAGTCCTGCTCTGGATCAGGGAGCAACTGAGGTTAATGGCTACATCCCTAATGCTCGCTGGTACAATTACCACACGGCAGAGCAGCTGAATGTAAGAGGCAAGTTTCTTACCATGCCCACTCCACTCGATCACATCAACCTACATGTGAGAGGAGGATTCATACTACCATGgcagaaaccagagaacaacACAAGATACAGTCGTAAAAATCCTCTTGGACTGATTGTCGCTCTTAACGATGATGGAACAGCATCAGGTTCTCTGTTCTGGGATGATGGAGAGGGAATCGGCACTTATGAGAAGAATGAATACCTCCTGACACACTTCAATGTGCTTAAGaacaCTCTCTCGTGCTTAGTTATGCATAATGGTCTAGCTTCAGCTGATCAGCTCATACTTGGCCAAATAAAAGTTTGGGGTGCAGGAGATCTCCCCATCACTAAGGTGACCATCAAGACAACTGGAACTGAAACACCGCTGACCACATTTTCCCATAACCAAAACACACAGGAGCTGATCATCGACGTGACAAACAACTCACATGTAATAGGACAACAATTCTCAATCACTTGGAGCACAGGAatatgaaaaaggaaaatgcaaacacaaatCAAGATCATCTCTTTACTTCCCATTATTTGAATTGTATTTATAGAGTCAAGTAGCATCAGCAATGAAAAGCAAATCTAAGTGAATTCTGTCTTATGTAAATTGTACATGGTGAGCTTATTTTCCAGAGAACATCCAAACTGTAAGAAActaattgtaataaattaaagctgaaaaaaaaaacgta

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K12047 MGAM; maltase-glucoamylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122108 lncRNA downstream 2732 22228385 ~ 22228716 (-) True G103161
TU122106 lncRNA downstream 3585 22227628 ~ 22227863 (-) True G103159
TU122105 lncRNA downstream 6884 22224329 ~ 22224564 (-) True G103158
TU122103 lncRNA downstream 7427 22223585 ~ 22224021 (-) True G103156
TU122044 lncRNA downstream 435205 21795773 ~ 21796243 (-) True G103099
TU122186 lncRNA upstream 29177 22335946 ~ 22336703 (-) True G103235
TU122387 lncRNA upstream 559155 22865924 ~ 22883153 (-) True G103410
TU122418 lncRNA upstream 621400 22928169 ~ 22936046 (-) True G103436
TU122573 lncRNA upstream 912253 23219022 ~ 23259188 (-) True G103576
TU122600 lncRNA upstream 956038 23262807 ~ 23263083 (-) True G103600
XM_026913317.2 mRNA downstream 567121 21641638 ~ 21664327 (-) True serpini1
XM_026913538.2 mRNA downstream 596891 21623853 ~ 21634557 (-) False LOC113526476
XM_026913536.2 mRNA downstream 596891 21623853 ~ 21634557 (-) True LOC113526476
XM_034305085.1 mRNA downstream 656602 21495122 ~ 21574846 (-) True ppfia1
XM_034305499.1 mRNA downstream 738967 21467974 ~ 21492481 (-) False LOC113526680
XM_026913500.2 mRNA upstream 29991 22336760 ~ 22341441 (-) True slitrk3a
XM_026914311.2 mRNA upstream 843339 23150108 ~ 23153649 (-) True LOC113526884
XM_026914213.2 mRNA upstream 851963 23158732 ~ 23162309 (-) True LOC113526825
XM_026914031.2 mRNA upstream 990586 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA upstream 990595 23297364 ~ 23298984 (-) False aamdc
XR_004578325.1 other downstream 1218348 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 1264538 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 2251189 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 2880505 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 4034642 18187447 ~ 18196806 (-) True G101178
XR_004578330.1 other upstream 1284176 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 2316747 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 2445843 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 3078556 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 3078556 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile