RNA id: XM_034305172.1


Basic Information

Item Value
RNA id XM_034305172.1
length 4021
RNA type mRNA
GC content 0.53
exon number 22
gene id LOC113526639
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1294052 ~ 1314655 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCTCCCCTAATGTCACAGAGCCTTTgcccaagacacacacacacacacacacacacacgggaatAGAAAAAGggagagtgtttgtgttccTCTGTGAGAAGACCATGAGCACAGGAGCCTGACCAAGAGACACTCTGTTTAATAACCTAGGGACAGCACagagtgtgtgaagagtgtgtcaggagtgtgtgtgaggagcgtGTGAGTCATGTCCATGTTGTTGCGGTGTGTGTGTAGCGTCTCGGTCAGACGTTTCCACAACATTCCTGCACTCTGGAACCAACATGCAGCTAAagGTGTTCCTTATAAGGACTTGCTGGTGGGCGTTCCTAAGGAAATCGTAAAGAATGAGCGGCGTGTAGCAGTGTCCCCTGCAGGTGTAGAGGCTCTGGTGAAGCAGGGTTTCCAAGTGCAGGTGGAGGAAGGAGCTGGCCAAGAGGCAAAGTTCTCCGACCAGCAGTACCGAGCAGCAGGAGCCTCCATCACAAACACCATGGGAGCATTTAACACGGACCTAGTGCTTAAAGTGCGAGCTCCAGTGTTTAATGACTCCTTGGGCCTCCATGAGGCGGAGCTGCTGAAGAAAGGCTCTACACTGGTGAGTTTTATTTATCCAGCGCAGAATCCTGAGCTGATGGAGAGACTGGCACAGCGTCACAGCACTGTGCTCGCCATGGACCAGGTACCACGAGTCACCATCGCTCAGAGCTACGATGCCCTCAGCTCCATGGCCAACATTGCTGGgtacaAGGCTGTGGTCCTCGCTGCAAACAATTTTGGTAGATTTTTCACTGGTCAGATTACAGCAGCAGGGAAGGTTCCTCCTGCGAAGgtgctggTGATCGGTGGTGGAGTAGCCGGCCTGGCCGCTGCAGGAGCTGCTAAATCTATGGGAGCCATTGTGAGAGGTTTCGACACCAGACCAGCAGCGCTGGAGCAGTTTAAGTCTTTCGGTGCAGAACCTTTGGAGGTGGATGTGAAGGAATCTGGGGAGGGAATTGGAGGTTACGCCAAGGAGATGTCTAAAGAGTTCATCGAGGCTGAGATGGCTCTGTTCGCCAAACAGTGCAAAGAAGTGGACATCGTCATCAGCACAGCTCTTATTCctggtaagAAAGCACCTGTGTTAATAACGAGGGAGATGGTGGAGAGCATGAAGGATGGATCAGTGGTGGTCGATTTGGCAGCAGAAGCAGGAGGAAATATAGAGACAACAAAACCTGGAGAACTGCACATACACAagGGAGTAACACACATCGGTTACACAGATCTGCCGAGTCTCATGGCCACTCAGTCGAGCACTCTGTACTCCAACAACGTGCTGAAGCTCCTGAAAGCCATCAGTCCTGATAAAGAGAAATTCCACTTCACACCCAGTGACACGTTCGATTACGGCACCGTCGATCACGTCATCAGAGGCACCGTGGTCATGCtgGAAGGTAAGAATATTTTCCCCTCCCCCTTACCAAGGACCGCCCCTCCCACCTCACCAGCCAAACAGAAAACAGTAGCTGAGCTGGAGGCGGAGAAAAGGGCAGGGATTTCCCCGTTCAGAAAAACCATGACCTCTGCTGGAGTTTACAcagcaggtgtgtccTCAGTGATCGGATTGGGCCTCATCTCCCCCAACGCTGCGTTCACACAGATGGTGACGACGTTCGGTCTGGCGGGAATCGTGGGGTATCACACCGTGTGGGGCGTCACCCCCGCTTTACACTCACCGCTAATGTCCGTCACCAACGCCATCTCAggtctgaCAGCAGTAGGTGGGTTGGTGCTGATGGGTGGAGGTCTCTCTCCTTCTACACTTCCTGAATCTCTCGCTCTGCTCGCTGCCTTCGTTTCCTCCATCAACATCGCAGgtgggttCCTCATCACACAGAGGATGTTGGACATGTTTAAGAGACCTACAGATCCTCCAGAGTATAATTACCTGTACGCTCTCCCCGGAGCCGTGTTCGTGGGCGGATACGGAGCGTCGCATTACGCGGGATACAACATCGAACAGatgatgtATCTGGGTGCGGGTCTGTGTTGTGTCGGTGCGTTAGCCGGTCTCTCGGCTCAGGGTACCAGTCGCCTTGGTAACGCGTTGGGGATGATTGGCGTGTCAGGCGGTATTGCGGCTACACTCGGCGTGCTCAAACCCTCACCTGAACTCCTCACTCAGATGTCCCTCGCCATGGCAACTGGAGGAACTCTGGgTCTCACCGTGGCTAAGCGGATCGAGATCTCAGACCTTCCTCAGCTGGTCGCTGGGTTCCACAGTCTGGTCGGACTGGCTGCGGTTCTCACCTGCGTCGCCGAGTTCATGATCGAGCACCCGCACCTCGACACTCACCCGGCCGCCTCAGTGCTCAAGTGTGTCGCCTACCTAGGGACCTACATCGGCGGAGTGACCTTCACTGGCTCCCTTGTGGCCTACGGCAAGCTGCAAGgtctcCTAGACTCCGCCCCCCTGCTCCTCCCCGGTCGTCACCTGTTGAATGCGTGTCTGATGGCTGCCTCTGCAGGGGGGTTAGTGCCCTTCATGCTGAGTGACAGTTATATGACGGGGATGAGCTGTCTGCTCGCTGTGTCTGCTCTCTCCGGGGTCATGggtgtGACCCTGACCGCAGCTATAGGTGGAGCCGACATGCCTGTGGTGATCACGGTGTTGAACAGTTACTCAGGCTGGGCTCTGTGTGCTGAAGGCTTCCTGCTTGATAATAACCTCATGACCATCGTGGGAGCTCTGATTGGCTCGTCCGGCGCCATCCTCTCTTACATCATGTGTGTGgcgATGAATCGCTCTCTTCCTAACGTGATCCTTGGTGGATACGGAACCACATCCACGGCTGGAGGAAAGCCGATGGAGATTGTTGGCACACACACCGAGGTGAACCTGGATCAGGCAGTGGAGATGATCAGAGAAGCCAACTCCATCATTATCACACCAGggtggggTCTTTGTGCAGCGAAGGCTCAGTATCCCATCGCTGACATGGTGAAGATGCTGACAGAGCAGGGCAAGACTgtcagGTTTGGGATTCACCCAGTCGCAGGACGCATGCCAGGACAGCTGAACGTGCTATTGGCCGAAGCTGGAGTTCCTTATGATATTGTTCTGGAAATGGACGAGATTAATGAGGATTTCCCTGagactGATTTGACGCTTGTGATTGGAGCCAATGACACGGTGAACTCTGCGGCTCAGGAAGATCCGAACTCCATCATCGCCGGGATGCCTGTGCTGGAGGTGTGGAAGTCCAAACAGgtgatcGTGATGAAGCGGACGCTTGGTGTGGGTTACGCCGCTGTGGATAATCCCATCTTCTACAAACCCAACACAGCCATGCTGCTCGGAGACGCCAAGAAAACCTGCGACAGTCTGCAGGCTAAGATCAGAGACACCCTCGGCACCAATTAggagaaatgacatttattCTTCatcacactctcCTGCGCACAAAATAATAAAGCGAACACATCACACTCTCCAGCACACTCAGTAATACAGcaaacacatcacactctcCAGCACACAAAATAATACAGCGAACACATCACACTCTCCAGCACACTCAGTAATACAGcaaacacatcacactctccagcacacaaaataatacagcgaacacatcacactctccagcacacaaaataataaagcGAACACATCACACTCTCCTGCGCACAAAATAATAAAGCGAACACATCACACTCTCCTGCGCACAAAATAATACAGTGAACACATCACACTCTCCTGCACACTCAGTAATACAGCGAACACATCACACTCTCCTGCGCACAAAATAATACAGTGAACACATCACACTCTCCTGCACACTCAGTAATACAGCGAACACATCACACTCTCCTGCACACTCAGTAATACAGCGAACACATCACACTCTCCTGCACACTCAGTAATACAGCGAACACATCACACTCTCCTGCACACTCAGTAATACAGCGAACACATCACACTCTCCTGCACACAAAATAATACAGCGAACACATCACACTCTCCTGCGCAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008750 NAD(P)+ transhydrogenase (AB-specific) activity molecular_function
GO:0050661 NADP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109581 lncRNA downstream 1559 1197159 ~ 1292493 (-) False bloc1s6
TU109649 lncRNA downstream 77615 1149539 ~ 1216437 (-) True G92294
TU109728 lncRNA downstream 277870 1014447 ~ 1016182 (-) True G92359
TU109711 lncRNA downstream 309531 982501 ~ 984521 (-) True G92343
TU109618 lncRNA downstream 317503 970248 ~ 976549 (-) False G92282
TU109844 lncRNA upstream 22236 1336891 ~ 1341381 (-) False G92421
TU109845 lncRNA upstream 22236 1336891 ~ 1341381 (-) False G92421
TU109847 lncRNA upstream 22236 1336891 ~ 1341381 (-) False G92421
TU109846 lncRNA upstream 25235 1339890 ~ 1341381 (-) False G92421
TU109841 lncRNA upstream 25602 1340257 ~ 1341381 (-) True G92421
XM_034305319.1 mRNA downstream 59426 1227607 ~ 1234626 (-) True spata5l1
XM_034305524.1 mRNA downstream 67701 1222902 ~ 1226351 (-) False c6h15orf48
XM_034305212.1 mRNA downstream 92327 1197135 ~ 1201725 (-) False bloc1s6
XM_034305211.1 mRNA downstream 92329 1197135 ~ 1201723 (-) True bloc1s6
XM_034305508.1 mRNA downstream 144255 1125631 ~ 1149797 (-) True bnc1
XM_026911983.2 mRNA upstream 148088 1462743 ~ 1469671 (-) True dut
XM_026911985.2 mRNA upstream 148088 1462743 ~ 1469259 (-) False dut
XM_026911984.2 mRNA upstream 148088 1462743 ~ 1469223 (-) False dut
XM_034305386.1 mRNA upstream 164273 1478928 ~ 1492027 (-) True LOC113525461
XM_034305387.1 mRNA upstream 201149 1515804 ~ 1531051 (-) True LOC113525562
TU109770 other downstream 67750 1222721 ~ 1226302 (-) True c6h15orf48
TU109708 other downstream 304996 982067 ~ 989056 (-) True G92340
TU109707 other downstream 304996 983467 ~ 989056 (-) False G92340
XR_003402800.2 other downstream 447117 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 546522 707760 ~ 747530 (-) False G92240
TU109955 other upstream 201083 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 313146 1627801 ~ 1644217 (-) False sema6dl
TU109968 other upstream 313974 1628629 ~ 1648286 (-) False sema6dl
TU109993 other upstream 453750 1768405 ~ 1768795 (-) True G92531
TU110620 other upstream 1434733 2749388 ~ 2751169 (-) True G93046

Expression Profile