RNA id: XM_034305207.1


Basic Information

Item Value
RNA id XM_034305207.1
length 852
RNA type mRNA
GC content 0.51
exon number 6
gene id mibp2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 695169 ~ 699777 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGTGACTAACGGGGGTAAAACGACCCTGACTGACCGTCTGCAGCGGAAGCTGCCCAACTGCTGTATGGTGCATCAGGACGACTTCTTCAAGtgatCACAGCTTTGGACATGGACGCCATGATGAGCACCATCTACGCCTGGCAGGAGAACCCGGTGAAGTTTGAACGCTCTCACGGTGTGGAGAGCACGCTGGATCGCGAGATCCTCCCTCGCTCCGGAGAGGACGAGGACGAGAGCGTGCACATCCTCATCGTGGAAGGGTTTCTGCTCTACACCTAcggtCCTCTGATTGACGTGTTTGATCAGCGGTTGTTTATTTCCATCCCGTATGAAGAATGCAAAAAGAGGAGGTGctcaaGGAACTACGCCGTGCCGGACCCCCCGGGTCTGTTCGATGGTCATGTTTGGCCGATGTACGTCAAACACAAGAAGCTGATGGAGGACATGGGAGTGGATGtcgaaCAACTTGACGGAACCCTGTCGAAGGAGCAGCTGTTTAACACCGTGTATGGagacatcatcaacaacatccAGAAGCTAATGAGgtctGTTGATCAGCACTAAGCCGCATAAGGAGGAATACGAAGTCATCTCTGCcgcagaagagtgtgtgtgtgtgcgtgagtgtgtgtgcgtgagtgtgtgtgcgtgagtgtgtgtgcgtgagcgagtgtgtgtgtgtgcgagtgtgtgtgtatggtctCAGACTGGCTCTGCGTTGACTGTTATCTGCTTTAGCTCTTTTATACCTGTATATCCTCCATATTTATTTGCAGTAATAACAAAGCGAGCTCCTGTTAGATGCTCTGGAGAGTTTAATACACACTCCGTATTAAAGACGCCACTCCtaca

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0070831 basement membrane assembly biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0050262 ribosylnicotinamide kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109484 lncRNA downstream 89093 604050 ~ 606076 (-) True G92220
XR_004578333.1 lncRNA downstream 204373 489562 ~ 490796 (-) True LOC117597554
TU109450 lncRNA downstream 299905 393032 ~ 395264 (-) True G92197
TU108981 lncRNA downstream 396072 298547 ~ 299097 (-) True G91873
TU108859 lncRNA downstream 511373 183534 ~ 183796 (-) True G91786
TU109526 lncRNA upstream 8193 706750 ~ 708348 (-) False G92240
TU109536 lncRNA upstream 16263 714820 ~ 715497 (-) True G92247
TU109520 lncRNA upstream 32558 731115 ~ 732765 (-) True G92236
TU109525 lncRNA upstream 46970 745527 ~ 773557 (-) True G92239
TU109513 lncRNA upstream 84380 782937 ~ 786271 (-) False usp8
XM_034305286.1 mRNA downstream 34615 523454 ~ 660554 (-) False LOC113534387
XM_034305284.1 mRNA downstream 34622 523454 ~ 660547 (-) False LOC113534387
XM_034305287.1 mRNA downstream 34622 523454 ~ 660547 (-) False LOC113534387
XM_034305280.1 mRNA downstream 34623 523454 ~ 660546 (-) True LOC113534387
XM_034305291.1 mRNA downstream 34623 523454 ~ 660546 (-) False LOC113534387
XM_034305179.1 mRNA upstream 84353 782910 ~ 802212 (-) True usp8
XM_026913982.2 mRNA upstream 136559 835116 ~ 846927 (-) True slc27a2a
XM_034305119.1 mRNA upstream 336392 1034949 ~ 1056267 (-) True LOC117597537
XM_034305118.1 mRNA upstream 336392 1034949 ~ 1041417 (-) False LOC117597537
XM_034305122.1 mRNA upstream 358148 1056705 ~ 1074903 (-) True homer2
TU108961 other downstream 371559 302636 ~ 323610 (-) False dmxl2
TU108836 other downstream 550208 143425 ~ 144961 (-) True LOC113534658
TU109527 other upstream 8193 706750 ~ 710654 (-) True G92240
TU109528 other upstream 9203 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 137937 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 283510 982067 ~ 989056 (-) True G92340
TU109707 other upstream 284910 983467 ~ 989056 (-) False G92340

Expression Profile