RNA id: XM_034305244.1


Basic Information

Item Value
RNA id XM_034305244.1
length 8873
RNA type mRNA
GC content 0.49
exon number 42
gene id mical3a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10295851 ~ 10398875 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGAGATGGAGGTGTCGGTGCAGCAGGAGAGGGGATCAATCAGTCACACGTTCTCTTTGACCGCTTCGTTCAGGCCTCCACCTGTAAGGGGACCCTTAAAGCTTTTCAGGAGCTGTGTGACTTCCTTGAGCTCAAGCCCAGTGAGTATCGAGTCTTCTACCACAAGCTCAAGTCCAAGCTCAACTACTGGAAGGCGAAAGCACTCTGGGCCAAGCTAGACAAACGTGCCAGCCACAAGGAGTACAAGAAAGGCAGAGCTTGTGCTAACTCTAAGTGTCTGATCATCGGAGCAGGACCATGTGGCCTGCGCACGGCTATAGAACTTGGCTTTCTGGGAGCCAAGGTGGTCCTGTTGGAGAAGAGAGATGCTTTCTCCCGCAACAATGTCCTCCACCTGTGGCCTTTCACCATTCAGGATCTGCGGGGTCTCGGCGCAAAAAAGTTCTACGGAAAATTCTGTGCCGGCTCCATAGACCATATCAGTATTCGTCAGCTGCAATTGATGTTGCTGAAAATGGCTCTGCTCTTAGGTATCGAGATCCATGTCAATGTGGAGTTCAAAGGCCTCATCGAACCCCCAGAAGACCAAGAGAATGAGAGGATTGGCTGGAGAGCTGAAGTCCATCCTAAAACCCACCCTGTTAGCGAGCTGGAGTTTGATGTCATCATTGGGGCAGATGGGAGGAGAAACACGTTGTCAGggtTCAGAAGGAAAGAGTTCAGGGGCAAGCTGGCCATCGCCATCACGGCCAACTTTATTAACCGCAACACTACAGCTGAGGCCAAAGTGGAGGAGATCAGCGGGGTGGCCTTCATCTTCAACCAGAAGTTCTTTCAGGATCTAAGGGAAGCCACTGGGATTGATCTGGAAAACATTGTCTACTATAAGGATGACACGCACTACTTTGTGATGACTGCCAAGAAGCAGAGTCTGCTGGAGAAGGGCGTCATTCTGCACGATTATGTGGACACAGAGATGCTTCTATCCAGGTCTAATGTGGACCAAGCTGCTTTGCTGTCCTACGCCAGAGAGGCAGCTGACTTCTCCACCAATCACCAGCTGCCCAAGCTGGACTTCGCCATCAACCATTACGGGCAGCCTGATGTGGCCATGTTTGACTTCACGTGCATGTACGCCTCGGAAAATGCCGCGCTGGTGCGCCAACGCAACGGCCACCAGCTGCTCGTAGCTATAGTTGGAGACAGCCTTCTGGAGCCATTCTGGCCAATGGGGACAGGCATTGCACGAGGCTTCCTGGCGGCCATGGACTCGGCGTGGATGGTGAGAAGCTGGGCACAGGGCGCGTCTCCTCTCGAGGTGTTGGCGGAGAGGGAGAGTATATATCGTCTGCTCCCACAAACCACTCCAGAGAACGTGAGTAAGAACTACAGTCAGTACACATTGGATCCCACAACACGCTACCCCAACATCAGTCTGCACCTGCTCCGGCCCAATCAGGTACGGCATCTCCTAGACACTGGGGAAACCAGGGAAATTCGCATCGACATGGAGAGCGTGGTCAACTCTTCGACTCCCAAACTCACGAGGAATGaACTTCTGCTTGAGAAGCAGTTCCAAGAGTCTGTAGCGCGCTCCAGCAAGCTGCTAAACTGGTGTCAGAGGCAGACGGATGGCTATAGAGGGGTCAGTGTGTCTGATCTCACCATGTCATGGAAGAGTGGCTTGGCTTTGTGTGCCCTTATCTATCGCTACAGGCCAGACCTCATTGATTTTGACTCGCTGGACGAGAAGGACGTGGAGAAGAATAACCAGTTGGCTTTTGACATTGCTGAGAAGGAGTTCGGGATTTCGCCCATTATGACTGGGAAGGAGATGTCTATTGTAGTGGAGCCTGACAAGCTCTCCATGGTCATGTACCTCAGCCAGTTCTATGAGATGTTCAAGGACACAGTGCCCCCTGGTGAAAACCACAACCTGAGTCCAGAGGAAAAGGCTGCGCTGATCGCCAGCACTAAGTCTCCCATCTCCTTCCTCAGCAAACTTGGTCAAAGCATCAACATCTCGAGGAAACGCAACCCCAAGCAGGATAAGAAGGAGAAGGAGCTTGACGGATTGGGGAAGAGGAGAAAGACGAGTCAGACTGGCCAGTCTGAAGATGAGGAGCCTCAGCGGCCAGTGCGTGATGAGCGAACTTTTGTAGCCACGGCTCTAACGGAGCGTAGGGTCGACCCCACTGCAGCGGCTAACAACAACAAGGTGAAGTCAATGGCCACTCAGCTGCTAGCCAAGTTTGAGGAGAATGCTCCGGTACAGTCTACTGGACTCAAAAGACAGATTGACTCTATGCCTGATCTGGGGCTTGCGCTGTCTCCCTCCCTGCCATCCACCTCTCTGAAAGAGCCAGTGCAGCTGGCACCACTTCCCGCATGGAGAAAGGCTAGCAGAAGCAGCGATGGCCTGCGGAGCTGCCCTAAGAAAACCATTCTGCTctatcctcctcctccatcatcttCCTCTCCATCGCTCTCTTCACATACACAGAAGAATGTTCTCAAACTGGTGATagatgaacatgacagtgatgACGATGACAACCAGGATCATCTGACATTCTCTTACAGGGAAAGTGAGTTCAGATCTGTGGAGCCCGTCCATGTCGTTAACATTCAGGAGAGAGCTGAAGCGCTAGCCGCTAAGTTTACAGGGCAGTCCAGCAAGCCTGAAAAACCCCAGCCGATGAAAAAGCCATCACGCTTCTTTCTTCAGCAGTGGCTTTTGAGCCATGGGTTACACCCAGGACAGCCGTCCTGCTCCCCTGATCCTCAGCAGGAGGAGACACAGAGTTTGCGATTGCACTCTGATGATCAAGTGCCTATACACATCCCTAGCATCCAGGAGCGAGCCGAGAGGTTAGCCTCTCTGTTCAAAGACAAGCCTGCTAGACCCAAGCCTAAGAAAAAGCCCTCGCGCTTTCTTATCGAGCAGTGGCACAGAAAGCGGGAGATGTCCACTGATCCTCAGCTCACTTCACTCTCCTTGAACCGACAGCATTATGTAAAGATGTATACAGGTGGCGTGAGCTTGTTGGCTGAGCAAATAGCCAATCAGCTTCAGCCTCAGGAGGACTGCCGGAGCCGTCCCGATAAGAGGGAATTGGGTTCCTTGCGGAAGGAGTTTCCACAAAACATTGGAGGCAGCGATGTGTGTTTCTTCTGCCGGAAGCGTGTGTATGTGATGGAGCGACTGAGTGCGGAGGGCAAGTTCTTTCACCGCAGCTGCTTTAAGTGTGACTATTGCGGCACCACGCTGAGACTGTCGTCCTACGCCTTTGACGTGGAGGATGggaAGTTTTACTGTAAGCCGCATTACTGTTACCGGTTGTCTGGGCAGGCTCAGAGGAAAAGGcctgctcctcctgctgctcctctCCAGCCGAAGGAATCCCAGGCACCAGTGATACCTGCAGCCAGCTTGGATGCCCCTGGGGCTCCATGTCCGGTGGAGCGTGGGCCCTCAGCTCCCGAGGTGAATGGTCTGGCTGAGCCCAGTGTGGCAAAACGTCTGAAAGGAACTCCTGAGCGCATTGAGCTGGAGAACTACCGGCTGTCCAtgcagagagaggaggagctAGAGGAGGTGCCAGAGGAGACGCTGGCCGAGCACAACCTCAGCAGCGTGCTGGATAAAGGCACGGACGTGGACGAGGGCTCCAGTAGCTCGGAGTCTGACATGGAGGAAGAGGGTGAGGAGCTGGAGCCACCAGCCAACTCTGACCTGGGTGGAGTGCCATGGAAGGAGGCTGTGGAGCTCCACGCCAAACTGAAGGCTGGCAGCGAAGCTGGGGCAAGCAGGAAGGAGGGAGActtggaggaagaggaggaagaagaggagggagatgaggaagaggatgaggaggaggaggaggatgaggaagaagaagaggaggatgaagaagaagaagaatcaagTGATGAGGGGGAGTATTACCCTTGGGAAAGGGAGCTCCAGTCAGGTCTATGGCTGGAGAACCTGAAAGATGAAGAGGATACAGGTACCTTTAAAGCCAGGAACCTGCGAATTCAACAAACCTTGGAGCCAGTGGACCCTGTGCTCCCCCAGACGGAGGGGGAAAAGGAGGAGTGCTCAGATTCGGGCTCTCTTCCTTCACTCCTCACGCAGAACACCCAGCCTGTCTCCTGCACAGTCCCCTCCCACAAATCATTGCGGCACGAGGCTGTCAGGGCCTGGCTGGACTCCATGTCTGGAGAGCCCTGTgtagaagatgaagaagagccTGAGGCTGAAGCAGGAAGCCCAGACATTGAGCCTGGCACTGAGCTGGATGAAGAGGACATCCCTTCAGATGCAGAAGCTGAAGCTCGCTCGCAGCTTGTTGAGGATCCTGAGCCTCTTCCAGTAGACACTGGGAAGCCAGCGAGCCTAGAGCAAGTTTCCAGAATTGAGCATACAGAACGGGTGTCTGTTAGTCCAAAGGAAATCATTGTAGACGTTATTCTCACTCCAATCCCAAAGCCAAGTACACCTACAGAGGAGATCAAAGAAAAGTTGACTCCAGTGCTGATTAAATCTCCAGGCACACGCTTTTTTCCTGAGCCCTTTTTGCCTGATTATACCAAAACAGAGGTCCCACCATCACCTGAGGTTAAGACACCAAATACTCCTGTCGCGGTGGCATCTCCTATCCGCTTCCAGCCAGCGCCCCTACCAGATACGGTCACCCCCAAATCTCCTGTCCAGGTTGAGTCTTGTGCCTGCTCACCTTCAGCCAACCCCTTATCCCCAATTTGTGCTCAGCCCCTACCATGCCAGGAGCCCTCCTCACCCCTCTCTTCAGGCTCTCCTGTGAGGACTCAACCAGTTCCTGCTGTAACTTCCACTCCTCTGACAAAACCTGCCTCAGAGAGGACTACCACAGAATCTCTGAATGCAAAGGATTCGACAGTGGAGACGCCAGTCAAGAAGACTGACATCATTGAAGAGTTCTGGCTGAAGAGTGCTGAGATTAGGAGGAGCTTAGGGCTCATCCCACTGGACAGGAGCAAAGCTGTAGAGAAGAGCATTATTAAAACCCCTACCGCAGATCCTGTATTGTCTAAACCCCCGATCTCAGAGGACATATCGGAGAAGCCAGCATTCACAGGCCGCACAGTCATCCACAGACTCAATATTACTGTTGAGGGTCAGGTAATCTCTCCTGTAGAACCCAAGAGTAGTAGCTCAGAGAGGAAGGATCTGAGCAGTAGCTCTGGTCTGGGCTTGAACGATAGCAACACAACTAGTCAGACGCCTACCTGTGATAGCATTAACAACTCTGACTCAACCATGCTTACACCTCCTTCCAgtcctccaccacctccaccaaaTGAGGAGCCAGCAACTCTCACAAAGAAGAAGCCTCAAGTGTCTTGGGAGAAGCTATCTACTCCCAGTAAGGAACCTGAAGTGGAGAAAGCACCCACTAAAGTGAAAACTCCTACCAGTCCAAATCAGGACACATTTGTGACTGTTCCAGTAGCTGCTCCCAGAACTAACCCCCCAGTGGTGATGAGGATAAAGGAGCCCAATAAACCACGCCGAGAAGAAGTGAGGAAGTCCTTTGCAGAGTGCGTAGATGAGATTCCATTTGCTGATGATGTGGAGGACACGTATGATGATCGTACCCCTGACACAAGCATGCAGGATAGGTTTTACACCCCACCCACCAGCAGAGTGAACAGGGACAAGCCTTCCCTCCACCTCGCTTTGGCTATGGAGAATGGAAAACCCAACATCCATGGAGGTCTCGTGTCCAGATCAGTGAAGGGTCCCCAGCACTTTTCTCCTGAAGCCAAGGAGATTGCTGAAGAGCGGatgagggagagggagaagtCTGTGAAAAGTCAAGCTCTTAAGGATGCCATGGCCAAgcagattaataaaatgaaagaggCTGAGTCAAATAAGGGCGCTGTGGCCAAAGTGGCTTGGAACGTTTCGGACGTAGCTGTTAAACACAAGCAGCGCTCAAGTTCTCCAAAGTCTTCAGCTGTGAAAGCCTTGGAGAGCAAAAAACAAGCAGAGGGGCTTCCTGACCGTTTCTTTACCTCACCTTTAAATAAGAGTGTGGACAGTTCTGTCACCTCATCTGAGAGTTCCACAGGAGGCAAGAGTAAAAAACGTAGCTCCCTTTTCTCTCCGCGTAAGaacaagaaagagaagaaggcAAAAAATGAAAGCAGACACTCTGGTACAGAAGAGACCCCACCCAAACACAAGTCCTTGTGGAAAGCTGTATTTTCCGGCTACAAgaaagacaagaagaagaaagatgaCAAGTCTTCTCCAAGCACACCCTCTAGCTCCACAACAGTGGACtcaggaaagaagaaaggatCGCCTGTGGCAAGGTCCTCAGATTTGCATTTGAGAAGAAACCTCAGCTTTTCCGAGGACTCAGATCTGTCCTGTGATGATGTTCTGGAAAGATCCTCTCAGAAGTCGAAGGCGGATAAGACATACACTGAGGAAGAGCTAAATGCCAAGCTCACACGTAAGGTCCAGAAGGCAGCTCGGCGTCAGGCCAAGCAGGAGGAGCTGAAGAGGCTCCACAGGGCTCAGATCATTCAGAGACAGCTAGAGCAGGTGGAGGAGAAACAGAGGCAGCTGGAGGAGAGGGGTGTAGCAGTGGAGAAGGCTCTGCGAGGGGAAGCAGGAATGGGCAAAAAGGACGACCCGAAGCTGATGCAGGAATGGTTTAAACTGGTGCAGGAGAAGAATGCCTTGGTGCGCTATGAGTCGGAGCTGATGATATTTGCTCGTGAGTTGGAGTTGGAGGACAGGCAGAGTCGACTGCAGCAGGAGCTCAGAGAGCGCATGGCAATCGAAGaCCATTTAAAGACTGAGGCAGAGCTGACAGAGGAGAAGCGGATCCTGAACGAGATGTtggaggtggtggagcagaGGGACTCTCTGGTGGCTCTCCTGGAGGAGCAGAGACTCAGGGAGAAGGAAGAAGACAAAGACCTGGAGGCTGTCATGCTCTCCAAGGGCTTCAACCTCAACTGGGCTTAGTAGTAGCAGCAAATCCACTCAACATGATCTTCACAACACCACCATGAGGAATGTAAGGACTCGGTTGAGTTTGCCTGCCTCTCTCGATGACGTTTACACATCTTTCTGATGTTTGCGAGTCATCCTGGCTCGGCTCAGGGTTGGTCTCTtcacctgtctctctttatGCTTCAGTGGAAATCCAGTCGAGCCTTTGTGTCTGTACAAgacatttttccagtttttttttttttggtctcagAAAGGGAATAAACAGGGACGTCTAAAAGTCATTTCGGAAGGAACACAGCTTTTGTCGAATGTACTGTTCATCAGCTGTTACAGAGGAGAGAGGTCCTTGGACTCTATAtccatacttttttattttgactaCTGACTGAAAGTAGGAACACACTAATAGTTGAGATGCCTTTCCTACCCACAATGCAATGTGGAGACATGATcaatggcaattttttttttgccacagtcTGTATCAATCAAATAATCTGGCCAGAACTGTctagtaaaatatttattcatttgtttttgttttacagaaaaaGCATGCAATGAATTTTCTTTGCATACTAAAAAGAATCTCCATGTTCCTTGTATTTTTCATAAGTTATGAtcaggaaatgttttatttccccCTTAGCCACCTCATATCAGGACTAAAGGATATCTAAGAACAAGCATATCCTGTATTGTATATAGGACATGGCCTTTAGCTCATATTAAGTGGTGATGCACTCTTAGTGGAGCTTCTCATCTGCAGTGTCTAGTGCTGTCTCCTTGCTCTTAAGTGATCTTAATATTATTCCTGTGTAAGTTTACAATCAGCTCTCTGAAATGAATTTCCAACGGCCACACTACAGTTTACAGAAACAGAGGAATATTGTGCAGATATTTTCAATAATGGAAATGTACATGGGGAATTgcaatattaatgttttaaaagatATCTCAGTCtagacagtgagaaagagagtaaTTATACAATCAGATCATTGATATGTGGTGGATcatctttttatatttctagAATCCCTGACCTTTATTTGATATCAGATATCAGTAGTCCGCAACGTCTCTGTTACATTATTTGTCTCCTGGATTGCTGAAACCGAGCAAATCTGCTTCTTGTCTTCATACTGGGATCAAGATGAGAAACTGCATGCACTGGCTGTGTAGCAACATGCCTTTATCACATATTACATGTCATATTCACATCCACAATGTTTACTCACGTTTACCAagggttgatttttttttttatgtatttgtttttataaaaaaatacatttgtactACATGTGAGCATTCACACATCACTAACACACAATATTGATCAACAGCAAGAAATCATCATATATTTGGCCAAACCATTTGTAATGCCTTTGGCCAAGCTGTATGTCTTTTGGTCACATACTATATAGGTTGATTGTACCTATATTTCAGCTTGGTCACCATTACGCTGTATAGATGGACACAGActtttgtatgtatgtacaagATAACTGTGAGTAAAAAGTTACATGAGTGCAAGGCCTAGTTATTTAGACTGTGTAAATTGTTTTACAGAATTTATTGGTATTTATTaacatgtgtgaaaatgtattatatgtaaagaaaatggaacctaatttttaaaattgtatgttGTCAATTCTTGACGTGTAAATGCTTTCTGGTAGCTAATCTGCATATAAGACGTTGGATGTACGTTGgaaggtaataaaaaaaaaaaagcttttgttcCTCAGTTTCACTATGCcattttgttcttgtttgtttgaaatataCTGTAGGTCCTGTTCAAGAAAcaagtcaaaaataaaatgcagagaTATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115237 lncRNA downstream 23901 10266978 ~ 10271950 (-) True ttc38
TU115159 lncRNA downstream 200493 10071553 ~ 10095358 (-) True G97054
TU114927 lncRNA downstream 377418 9892526 ~ 9918433 (-) True tmtc2b
TU114926 lncRNA downstream 411396 9819387 ~ 9884455 (-) True G96840
TU114861 lncRNA downstream 523831 9750882 ~ 9772020 (-) False LOC113534661
TU115308 lncRNA upstream 20533 10369263 ~ 10370417 (-) True G97172
TU115309 lncRNA upstream 22018 10370748 ~ 10371325 (-) True G97173
TU115347 lncRNA upstream 130337 10479067 ~ 10479287 (-) True G97204
TU115367 lncRNA upstream 170367 10519097 ~ 10519305 (-) True G97224
TU115368 lncRNA upstream 172065 10520795 ~ 10520997 (-) True G97225
XM_026927171.2 mRNA downstream 1028 10268468 ~ 10294823 (-) False ttc38
XM_026927169.2 mRNA downstream 1031 10285477 ~ 10294820 (-) False ttc38
XM_026927423.2 mRNA downstream 277168 9997813 ~ 10018683 (-) True LOC113534539
XM_026927546.2 mRNA downstream 377370 9822233 ~ 9918481 (-) False tmtc2b
XM_034305082.1 mRNA downstream 524231 9750980 ~ 9771620 (-) False LOC113534661
XM_026926926.2 mRNA upstream 77010 10425740 ~ 10439871 (-) False wfdc1
XM_026926925.2 mRNA upstream 77010 10425740 ~ 10439870 (-) True wfdc1
XM_034305362.1 mRNA upstream 100256 10448986 ~ 10453158 (-) True si:dkey-246g23.4
XM_026927066.2 mRNA upstream 128456 10477186 ~ 10505123 (-) True kcng4a
XM_026927354.2 mRNA upstream 179447 10528177 ~ 10581902 (-) True si:dkey-246g23.2
XR_004578315.1 other downstream 1028 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1028 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 1817615 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2681755 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 3138363 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 1239271 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1963352 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 2048957 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 2072372 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 2697093 13045823 ~ 13052311 (-) True G98770

Expression Profile