RNA id: XM_034305306.1


Basic Information

Item Value
RNA id XM_034305306.1
length 2184
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC113534440
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 238677 ~ 247310 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actaatcaacaccttctgcgtgtgtgtgagagtcctTTAGTCACCAGCAGTGTAGATACAGAACAGTGGACACAACAGTGGAGATAAAGCCGATGCTAACATGGTGCTAGTCAGGACTTTCTAGGATTTGAAAGCTTGTGAGTTTTGCAAACATTTTGCGATATGCACGTCTGCGAGATACTCAAGGTCACTCAAGGTCAAACACACTGGCAGCGATCTAAACCCCCCAAGGTCAGTGCGGCTGGTGTGTGAGAGTCTTAACTCTTGTTTTGACGTGAGGACGAGCCGTGACCTGAGCTGACTTGTATAAAACAGCGTGAGAACACGCGGAGCTGCAGGTGAGAGACAGAACCCGTTCCCCGGTTCCCATGGCAGCACACGTGTTCCCGATGTGTGAGCGCGGGCTGAAGCCGGTGCGTTTCAGCGAGACCGTCATGGAGATTTTACTGCACGAGGCTCGGAACGGGACGAACCCACGGTACGAGAACCCGCGTGTGGTTACGCTGGTCCTGCTGCTGTGTCTGGTTCTGCTGCTCGCTGTGTGGAACCGCAACGAGAAAAAGTGCTCCATTCCAGgtccTTCGTTTTGTCTGGGGTTGGGTCCCCTGATGTCCTACTGCAGGTTTATGTGGATGGGAATCGGGACAGCGAGTAATTACTATAATGAGAAGTACGGGGACATGGTGCGAGTGTGGATCAGCGGAGAGGAGACGCTCGTCCTCAGCAGGCCGTCGGCGGTGTATCACGTGTTGAAACACTCGCAGTACACGTCGCGGTTTGGGAGTAAACTGGGGCTGCAGTGTATCGGCATGCACGAGCAGGGGATCATCTTCAACTCCAACGTCACGCTGTGGAAGAAAGTGCGTACGTACTTCGCTAAAGctctaACCGGTCCCGCGCTGCAGAGGACGTTGGAAATCTGCACCAcgtccacaaacacacacctggacgCTCTGTCTCGGCTGACGGACGCTCGGGGACAGGTGGACGTCCTGAACCTGCTGCGCTGCATCGTAGTGGACATTTCCAACCGCCTCTTCCTGGATGTGCCTCTGAACGaacaGAACCTGCTTTCCAAAATCCACAGGTACTTTGACACGTGGCAGACGGTGTTAATCAAACCGGACTTCTACTTCAGTCTGAAGTGGCtgcaagacaaacacagaaacgCTGCtcaGGAGCTTCATGATGCCATTGAGGATCTGATAGAACAGAAACGAACTGAACTGCAGCAGGCTGAAAAACTCGACAACCTGAACTTCACTGAGGAACTGATATTCTCCCagagtcaCGGTGAGATGACGGCGGAGAACGTGAGGCAGTGTGTGTTGGAGATGGTGATCGCGGCTCCGGACACTTTGTCTGTCAGTGTTTTCttcatgctgctgctgctgaaacAGAACGCTGAGGTGGAGCGACGCATCCTTACTGAGATACACACTGTGCTGGgtggagcagagctgcagcactctcatctctctcagcTTCATGTTCTGGAGTGTTTCATTAACGAGGCTCTGCGCTTTCACCCCGTGGTGGACTTCAGCATGCGCCGGGCGCtggatgatgatgtcatcgagGGCTACAGGGTGCCAAGAGGGACAAACATCATCCTAAATGTGGGGCGAATGCACAGGTCTGAGTTTTTCCCCAAACCCACAGAGTTCAGCCTCGACAACTTCAACAAACCTgtccCCAGTCGTTTTTTCCAGCCATTCGGTTCCGGTCCTCGTTCCTGTGTTGGTAAACACGTTGCCATGGTGATGATGAAGGCCgtgttggtgatggtgttgtCTCGTTTCTCCGTGTGTCCTGAGGAAAGCTGCACCGTGGAGAACATCGCACACACCAACGACCTCTCACAGCAACCTGTGgaggacaaacacacactgagcgtACGCTTCATCCCCcgtaacacacacacgagaaaccacaaagaagcctaaactcctctgtcctggagGTGTCGGGAAACTTATTCaaaaagttccagctttacctctgactgttacacagtgctgacactggagactccttccataaacactccataaacatctccttacaggaaacttcaccacaACAATGAGTTCTTTATCCGTGTGTGTGGAGCGGAGAAGAAACGCGGATCATAAATACAGTGTAAACGGTGATGAGGTTAGAGATTAagtgagaaaatgaaga

Function

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07434 CYP19A; aromatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108859 lncRNA downstream 54881 183534 ~ 183796 (-) True G91786
TU108826 lncRNA downstream 153132 84295 ~ 85545 (-) True G91764
TU108814 lncRNA downstream 175403 53728 ~ 63274 (-) True G91752
TU108981 lncRNA upstream 51237 298547 ~ 299097 (-) True G91873
TU109450 lncRNA upstream 145722 393032 ~ 395264 (-) True G92197
XR_004578333.1 lncRNA upstream 242252 489562 ~ 490796 (-) True LOC117597554
TU109484 lncRNA upstream 356740 604050 ~ 606076 (-) True G92220
TU109526 lncRNA upstream 459440 706750 ~ 708348 (-) False G92240
XM_026927244.2 mRNA downstream 15293 198973 ~ 223384 (-) True tnfaip8l3
XM_034305451.1 mRNA downstream 61033 177113 ~ 177644 (-) True LOC117597586
XM_034304930.1 mRNA downstream 83533 154067 ~ 155144 (-) True LOC117597506
XM_026927607.1 mRNA downstream 93716 143593 ~ 144961 (-) False LOC113534658
XM_026927617.2 mRNA downstream 97162 140270 ~ 141515 (-) True LOC113534665
XM_034305313.1 mRNA upstream 18897 266207 ~ 323940 (-) True dmxl2
XM_034305286.1 mRNA upstream 276144 523454 ~ 660554 (-) False LOC113534387
XM_034305284.1 mRNA upstream 276144 523454 ~ 660547 (-) False LOC113534387
XM_034305287.1 mRNA upstream 276144 523454 ~ 660547 (-) False LOC113534387
XM_034305280.1 mRNA upstream 276144 523454 ~ 660546 (-) True LOC113534387
TU108836 other downstream 93716 143425 ~ 144961 (-) True LOC113534658
TU108961 other upstream 55326 302636 ~ 323610 (-) False dmxl2
TU109527 other upstream 459440 706750 ~ 710654 (-) True G92240
TU109528 other upstream 460450 707760 ~ 747530 (-) False G92240
XR_003402800.2 other upstream 589184 836494 ~ 846935 (-) False slc27a2a
TU109708 other upstream 734757 982067 ~ 989056 (-) True G92340

Expression Profile