RNA id: XM_034305331.1


Basic Information

Item Value
RNA id XM_034305331.1
length 1599
RNA type mRNA
GC content 0.58
exon number 11
gene id lekr1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3243210 ~ 3291236 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGgtCAGTGTGTGAGCGACAGCGTGCTCTCCTGCATGAGGCTGGGCCTGTGCTGCAATGTGCTGCTGCAGAGCTGCGAGGTGTGAAACGGGAGCTCTCTCTGCTCTCACAGGACTGGAACACCAACACAGCACTGATACTGCAGCACTGCTCTACTGCGTGGACtgaGCATGTCGTTCTGCAGCAGGAAGTGAGCAGGGCTGAGGAGGAAGCAGTAAAGCTACAGCAGGAGGTCCGGGAGCTTCAGGAGCGTCTGCACGCGGGTCAGTTGGAGACGCAGACGCTGGAGAACCGCATCCAGAACCAGGAGTTTctccagaaccagaaccagcaGGagctgaaacaggaagtgaagagcCTGCAGGAAGAGCTGCACAAAAGTCACAGTGAGAGGGAGTGGGTGGAGAGACTGCTGGAAAGCagaaggaaagaggaagaggaaagatGTTCACGGCTGCAGCAGCAGTGTGATGAGCAGAGCGCCACCATACTGAGTCTGTCCCAAGACCTGAGGGAAAAGGAGGCGAGCTGGTTGTCATGCCAACACCGATGCGAGTCCCTGCAGCAGCAGCTGTTGACGTGGAAACGGAAGGAGGCGGAGACGAAGCAGGAACTGGAAGGAGCTCTGAGGGAGGGTCAGAAGATAAGAGACGAGagGGAGGCGCTGAAATGCGCTCAGAAAGAAGAGATGCAGAAGATGGAGGACACGTTCAGGAAAAGACTGGAGCTCTTTGAGGAACAGAGGTCAAAGTGGAGGAGAGACGCTGCTCTAGAGCTCGACATCGAGAGGCAGAAAAATGAACAACTGATTCACAAGTACCACACCAAGTACCAGCAGCTACAGGACaagCTGCCCACTCTGGTGGAATCTGCCATACGGGAGCTGAAGGAGGAGGTGTCGGCTCTGGAGGTACGCCTGAGAGAGCGTGAGAAGGAGGTGAAGTGTGTGCGAGAGGAGGCCGCGGAGCGAGAGGAACGGCTCCTGCGAGAGCAGCAAGCGGAGGTGGAACAGCTTCAGCACAAACTACAGGAGCATCAACAGGAGGCACTGGAGCTACAGCGAGCGCACAGAGACATCCAGCAGCTCAGAAAGGAAAACTCCGCTCTACATGACGAGAACTGTCTGCTGCAGGAGACGGTGAGACGCGAGTGTGAGGAGCGAGCCGAGCTGACGGCCGCCCTGTGCCTGGCGAGAGAGCAGCTGCCGCGTGTCAGACAGACAGCGGTGAACTCCTCCATCGCCCACAGCTCCGCGTCGTCCTCCCTGCCCAGCCTGAGCGCAGGACACAGCCGCAGCGCCGTCACCGCTGGCAGGAGCACAGCGTCGTGGCACGGAAACTCCCGCCAGCCGCTGCCCGCTCTGCCCCGACTCGCCACAGAGAGACCCGCCCCACTCACCGGGACACGCCATCGCGTCGGCACGGTGACGGGCAGGAAGCACAAACGCTCATGCTGAGGGAGAGGCtctcacaggttcaaaagcaattggacaattgactgataagcagtttcacaGCCTGTTTCCTCAAAACTTCAAGAcagatgaagcagataaaaggtctggagttgatatcaggtatttggcaactgttcgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110952 lncRNA downstream 7558 3227269 ~ 3235652 (-) True G93339
TU110953 lncRNA downstream 7558 3230950 ~ 3235652 (-) False G93339
TU110967 lncRNA downstream 27745 3215259 ~ 3215465 (-) True G93353
TU110964 lncRNA downstream 31087 3211868 ~ 3212123 (-) True G93350
TU110963 lncRNA downstream 31406 3211591 ~ 3211804 (-) True G93349
TU111001 lncRNA upstream 75485 3366721 ~ 3367195 (-) True G93380
XR_004578300.1 lncRNA upstream 114909 3406145 ~ 3422158 (-) True LOC117597513
TU111130 lncRNA upstream 133787 3425023 ~ 3454371 (-) True G93505
TU111190 lncRNA upstream 287781 3579017 ~ 3581206 (-) True G93557
TU111281 lncRNA upstream 443861 3735097 ~ 3735392 (-) True G93639
XM_026927191.2 mRNA downstream 113821 3123317 ~ 3129389 (-) True ptx3a
XM_026926991.2 mRNA downstream 174909 3064670 ~ 3068301 (-) True LOC113534302
XM_026927419.2 mRNA downstream 181715 3056704 ~ 3061495 (-) True LOC113534536
XM_026927431.2 mRNA downstream 190015 3048260 ~ 3053195 (-) True LOC113534544
XM_034305155.1 mRNA downstream 382251 2799623 ~ 2860959 (-) True pepd
XM_026927330.2 mRNA upstream 76165 3367401 ~ 3398528 (-) False tiparp
XM_034305276.1 mRNA upstream 76165 3367401 ~ 3398091 (-) True tiparp
XM_034305556.1 mRNA upstream 134482 3425718 ~ 3548751 (-) False kcnab1a
XM_034305553.1 mRNA upstream 134482 3425718 ~ 3531691 (-) False kcnab1a
XM_034305554.1 mRNA upstream 134482 3425718 ~ 3510571 (-) True kcnab1a
TU110621 other downstream 474912 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 492041 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 1474415 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 1594924 1628629 ~ 1648286 (-) False sema6dl
TU109967 other downstream 1598993 1627801 ~ 1644217 (-) False sema6dl
XR_004578380.1 other upstream 137792 3429028 ~ 3531691 (-) False kcnab1a
TU111361 other upstream 882052 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 1201310 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2902839 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 3574032 6865268 ~ 6865339 (-) True trnap-agg

Expression Profile