RNA id: XM_034305336.1


Basic Information

Item Value
RNA id XM_034305336.1
length 2454
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC117597563
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4049740 ~ 4053694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAATGGAGATTTTGTGATTGGAGGGATTTTCACTTTTCATCATTATACAAAAACAGAGCAAATTACATACACCAGGTTGCCATCCCAAACACAGTGCTATGGCATTGACTTCAGGGAAGTTCGCTTTGCCCGTGCCATGGAGTTCACCATCCACGAGATCAACAGCAGAACAGATCTCCTCCCGGGCATTAAGTTAGGCTATCAGATACATGACTCATGTTCTACTGTGCCAATGGCAATCAGAGTTGCAGTTCAGCTTGCAAATGGTTTTGAGCCAGTGTTCAATGAAACCAGTTCTTGTTCTGAATATGCAGCAGCCACTCTGCCTGCTATCATAGGAGACTCTGCTTCCACACAGTCAATCAGCATAGCCAGAATGCTTGGTCTTTTTGGAATTCCACAGGTGAGTCACTATGCGACCTGCGCATGTCTGAGTGATAAGAATCACTATCCTACCTTCTTTAGGACCATACCTAGTGACCAACATCAAGCAGCTGCACTGGCAAGAATGGTCAAGCATTTTGGATGGACATGGATTGGAGCAGTTCGTAGTGACTCAGACTATGGAAATTATGGAATGGCATCATTCTTAAAGGCTGCGCAAACAGAGGGGATCTGTGTGGAATTTTCCGAGGCTTACTACAGGACACAGCCACGTAGTAAACTGGAGCGAGTGGCAAATGTCATTCGGAGATCCACAGCCCGGGTTATAATAGCATTTATGGCATCAGGTGACATGAAGATTCTTTTAGCAGAGCTATCACGACAGCCACCACCTCCACTTCAGTGGATTGGAAGTGAAACGTGGATCACAGATCCTGATATTTTGCAGTATAACATGTGCGCTGCTGCAATAGGGTTTGGTGTTCCCCAGTCAGTTATTCCTGGCCTTCGTGAGTTTCTTCTAGACCTCACTCCAAGCAAAGCATTACAATCACCCTTGTTAACAGAATTTTGGGAGAGCTCATTCAGCTGTAACCTTAAAGGTCTAACAGGTGTCTCAGAAGTCATGCGGGAATGTGATGGCAGTGAGgacattcacacactgcagaacCCATACTTAGACACGTCTCAGTTGCGCATCACTAACATGGTGTACAAAGCAACATATGCCATAGCACATGCCATCCATGGTCTGATTTGTAATGGCACCCGATGTGATAAAACCATTCAATTTTCACCATGGCAGGTTCTCAATCAACTCAAACTAGTGAACTTCACTACAAATAATGGTTTTCGGGTCTCGTTTGATTCGAATGGAGACCCTCCAGCTGTCTACGAACTCATAAACTGGCAGTTTAAGAAAAATGGTGCTTTGGATTTTGTCACAGTGGGCCAGTATGACTCATCTAAACCAAGAGGACAAGAGTtcagaatgagcaaaaatatcaGCTGGGTTGGAGGACAGACTGAGGTACCAGTgtctgtgtgcagtgagagcTGTCCTCCAGGCACCAGGAAAGCTGTACAGAAGAGAAGGCCTGTCTGCTGTTTTGACTGTATACCATGCGCTGAAGGAGAGATCAGTAACAAAACGGATTCTCTGGATTGTTTTCGCTGCCCTCCTGAGTTTTGGCCCAATGCCAAGCAAGACAGCTGCCTCCCAAAGCCTGTTGAGTTCCTCTCCTGGGATGAAACTCTGGGCATCATCCTAACTGTCTTCTCCATCGCTGGGGCCTtcatagctgtgtgtgtaggtgctgtCTTTTACAAACACAGGACCTCTCCTATTGTCAGGGCCAATAACTCAGAACTCAGCTTTCTGTTGCTcttctctctgactctgtgtttcctctgttcaCTTACTTTCATTGGTCGGCCCTCTGAGTGGTCCTGTGTACTGCGCCACACAGCATTTGGGATCACCTTTGTCCTCTGCATCTCCTGTGTTCTGGGAAAAACAATAGTGGTGTTAATGGCTTTCAGGGCTACACTTCCAGGTAGTAATGTCATGAAATGGTTTGGGCCTCCACAACAAAGACTCAGTGTGATTTCTTTTACTCTCATACAAGTCcttatttgtgtgctttggttgAAAATATCACCTCCTTTCCCCTTCAGAAATCTAAAGCACTACAAGGAAAAAATAATCTTAGAATGTGGCTTAGGTTCAGCTATAGGATTCTGGGCTGTGCTGGGATATATAGGATTCCTTGCActtttgtgctttattttagcttttctaGCACGGAAGTTGCCTGATCATTTTAATGAAGCCAAATTCATCACATTCAGCATGCTCATATTTTGTGCAGTTTGGATCTCCTTTATTCCTGCTTATGTCAGCTCTCCTGGAAAATTCACTGTAGCTGTTGAAATATTTGCAATTCTGGCTTCAAGCTTTGGtttgattatttgtatttttgctcccaaatgtttcataattatttttaagcCAGATCAGAATACCAAGAAACACATTATGGGTAAGGCATATTCAAAAGATCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578346.1 lncRNA downstream 103364 3944987 ~ 3946376 (-) False LOC113534402
XR_004578345.1 lncRNA downstream 103364 3944987 ~ 3946376 (-) True LOC113534402
TU111281 lncRNA downstream 314348 3735097 ~ 3735392 (-) True G93639
TU111190 lncRNA downstream 468534 3579017 ~ 3581206 (-) True G93557
TU111130 lncRNA downstream 595369 3425023 ~ 3454371 (-) True G93505
TU111341 lncRNA upstream 19521 4073215 ~ 4073533 (-) False LOC117597611
TU111357 lncRNA upstream 101563 4155257 ~ 4155497 (-) True G93707
TU111360 lncRNA upstream 118379 4172073 ~ 4172312 (-) True G93710
TU111366 lncRNA upstream 130061 4183755 ~ 4183993 (-) True G93716
TU111372 lncRNA upstream 163884 4217578 ~ 4217842 (-) False LOC113534736
XM_026927698.2 mRNA downstream 4270 4041522 ~ 4045470 (-) True LOC113534744
XM_026927497.2 mRNA downstream 13532 4031091 ~ 4036208 (-) True LOC113534594
XM_026927506.1 mRNA downstream 21345 4025027 ~ 4028395 (-) True LOC113534603
XM_026927015.2 mRNA downstream 39806 4005783 ~ 4009934 (-) True LOC113534321
XM_026927533.2 mRNA downstream 64000 3982119 ~ 3985740 (-) True LOC113534613
XM_034305520.1 mRNA upstream 17106 4070800 ~ 4073519 (-) True LOC117597611
XM_034305521.1 mRNA upstream 17945 4071639 ~ 4073519 (-) False LOC117597611
XM_034305337.1 mRNA upstream 21562 4075256 ~ 4076641 (-) True LOC117597564
XM_034305338.1 mRNA upstream 22964 4076658 ~ 4078462 (-) True LOC117597565
XM_034305339.1 mRNA upstream 31428 4085122 ~ 4092659 (-) True LOC113534742
XR_004578380.1 other downstream 518049 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1281442 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1298571 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2280945 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 2401454 1628629 ~ 1648286 (-) False sema6dl
TU111361 other upstream 119594 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 438852 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2140381 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2811574 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 3094250 7147944 ~ 7157488 (-) False LOC113534453

Expression Profile