RNA id: XM_034305349.1


Basic Information

Item Value
RNA id XM_034305349.1
length 2319
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC113534724
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4552139 ~ 4557113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGATGGAGTGGGAATTGACCTCAGTGAATTCCGACTTGCTCAGACTATGACTTTTGCAATTGATGAAATCAACAGAAGCAACAACTTGCTACCAAATATCTCACTTGGTTACAAGATTTATGATAATTGTCTCTCAGGCTTGTTATCTATGAAGGCAGCCATGTCTTTAATGAATGGTCAGGACATAACAGCAGATGCCTGCTCTGGACAAGCAGTAGTACAAGCCATCATAGGGGAGTCAGAGTCTACTCCTACTATAGCACTCACAAAAACTACAGGACCTTTTAACATCCCAGTGATAAGTCATGCTGCCACATGTGAATGTTTGAGCAACAGAAAAGATTACCCCTCTTTCTTCAGGACCATACCGAGTGACTACTACCAGGGTAGAGCACTGGCATATTTGGTCAAGCACTTTGGCTGGTCTTGGGTGGGAGCTGTGTACAGTGATAATGACTATGGCAACAATGGAATGGCCATTTTTCTGAATGCAGCCAAAGAGGAGGGAATATGTGTTGAGTACTCAGAGAAGTTTGACCGGTCAGATCCTGCCAAAATGGTTAAAGTGGCTGATATTATTAAGAAAGGCACAGCCAAAGTAATTATTGTATTTCTCGCCTActttgatatgaacatttttatagAACAGCTTATATTAAATAATCTAACTGGCTACCAGATGATTGGTGTTGCATGGATTTCTGCTGGTGATCTAGCAACACCAGCAAGTTACAATGTATTGGCTGGAGCCATTGGTTTTGATGTGGGAAAATTGAAGATTGGTAATTTTGCTCACTATGCTGTCAATGAATTTTGGCAAACAGCACTCCCTTGCTTGCATACAGAGGGAAATATATCTCAAACTGAAAACAACTGCAAGAAATATGAAGATATGATTCAATTTAAAAACTACAGTAAGGATATATCAGAATTGAGATATGCAAATAATGTCTACAATGCAGTCTATACTGTGGCACATTCTCTACACACGCTGTTGAGATGTACAGAAAACCAGAgttgtgagaaaaacaaaacaattcaaCCATGGCAGGTTGTTATGTCGCTAAAAAGGGTAAATTTTACCACCAAAGTAGGAGAACAGGTTTGGTTTGACAGCACTGGGGCAACGGCTGCAAAGTATGATGTGGTTAACTGGCAACGAGGGTTCAATGGAGAAGTGCAGTTTAAGGTTGTGGGCTATTATGACGCCTCTCTGCCAACTGGACAACAATTTGTCCTAAATGCTGAAGATATAGTCTGGGCTGGAGAGAATAGAGAGAAGCCAAGgtctgtgtgcagtgagagcTGTCCTCCAGGAACCAGGAAAGCTGCACAGAAAGGAAGGCCTGTCTGCTGCTACGACTGTATACCATGTGCAGAGGGAGAGATCAGTAACCAGACAGATTCAAATAACTGCGAGCAGTGTCCAGGAGAATATTGGTCTAATGCTGATAgagataaatgtgtgttaaagGTCATAGAGTTTCTTTCATTTACAGAGGTTATGGGGATAGTACTGGTACTTTTTTCCTTGTTTGGAGCTACATTAACTGTGTTAgtagctattttatttttaatagaaaaggACACTCCTATTGTTAAGGCCAACAACTCTGAGCTGAGCTTCCTGCTGCTGTTCTCCCTGactctgtgtttcctctgttcaCTTACTTTCATTGGACGGCCCTCTCAGTGGTCCTGTATGCTGCGACACACAGCGTTTGGGATCACCTTTGTCCTCTGTATCTCCTGTGTTCTGGGAAAAACAATAGTGGTGTTAGTGGCCTTCAGGGCTACACTTCCAGGcagtaatgtaatgaaatggtttgggcctctacagcagagactcagtgTACTTGCATTCACTCTCATACAGGTTCTTATTTGTGTGCTGTGGTTAACACTTTCCCCTCCTTTCCCCTATAAGAACATGAACTACTACAAGGAAAGGATCATATTAGAATGTAACTTGGGCTCAGCTATAGGTTTCTGGGCAGTGTTGGGTTATATTGGAGTACTTGCTTTCTTGTGCTTTGTTTTGGCTTTCTTAGCTAGAAAGCTGCCAGATAATTTTAATGAAGCTAAATTCATCACATTCAGCATACTCATATTCTGTGCTGTGTGGATAACCTTTATTCCAGCTTATGTCAGCTCTCCTGGAAAATTTACTGTAGCTGTGGAGATATTTGCTATTTTGGCCTCTAGTTTTGCTCTactgttctgtatatttacacctaaatgttatattattctgtttaaacctgaactaaacacaaagaaaaatatgatgGGTAAAATGGCATCTAAATCACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111413 lncRNA downstream 5434 4546439 ~ 4546705 (-) True G93753
XR_004578376.1 lncRNA downstream 320308 4231460 ~ 4231831 (-) True LOC117597614
TU111372 lncRNA downstream 334297 4217578 ~ 4217842 (-) False LOC113534736
TU111366 lncRNA downstream 368146 4183755 ~ 4183993 (-) True G93716
TU111360 lncRNA downstream 379827 4172073 ~ 4172312 (-) True G93710
TU111561 lncRNA upstream 226812 4783925 ~ 4785131 (-) True G93896
TU111595 lncRNA upstream 336473 4893586 ~ 4894074 (-) True G93926
XR_004578349.1 lncRNA upstream 409521 4966634 ~ 4971603 (-) True LOC117597587
TU111675 lncRNA upstream 450312 5007425 ~ 5011433 (-) True G93988
TU111702 lncRNA upstream 519027 5076140 ~ 5179801 (-) False G94010
XM_034305347.1 mRNA downstream 10371 4537081 ~ 4541768 (-) True LOC113534725
XM_026927682.2 mRNA downstream 18268 4527208 ~ 4533871 (-) True LOC113534726
XM_026927531.1 mRNA downstream 33205 4515183 ~ 4518934 (-) True LOC113534611
XM_026927684.2 mRNA downstream 45140 4499062 ~ 4506999 (-) True LOC113534728
XM_034305346.1 mRNA downstream 72532 4471011 ~ 4479607 (-) True LOC113534730
XM_034305350.1 mRNA upstream 984 4558097 ~ 4562322 (-) True LOC113534723
XM_034305162.1 mRNA upstream 12190 4569303 ~ 4577572 (-) True LOC117597542
XM_026927678.2 mRNA upstream 32073 4589186 ~ 4594035 (-) True LOC113534722
XM_026927677.2 mRNA upstream 40461 4597574 ~ 4602961 (-) True LOC113534721
XM_026927724.2 mRNA upstream 73739 4630852 ~ 4634757 (-) True LOC113534774
XR_004578382.1 other downstream 59400 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 378545 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 1020448 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1783841 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1800970 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 1636962 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2308155 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2590831 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 2885260 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 3911188 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile