RNA id: XM_034305355.1


Basic Information

Item Value
RNA id XM_034305355.1
length 378
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC117597570
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5807422 ~ 5809517 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACACAGAGAAGGGTATAAAACCCAGCCGTCCCTCTGCCACTGTACCATCTCATTTCTTCTTGGAGTTCTGAGGAcatttgctgtcatgtttgtgTATAAGGTGACTGTGGGTCTGTTGGCCCTGCTGCTGGTCTGTTCTGCAGAGGAGgactctctttctcttctgccTGTGGGAGAATTGATCGAGAGAGCAAACAGTAAAATCAATCGTGCCATTGGTGACACTGTGCTGATTGAAGGAGACATTGCTGTTCCTACTGGCAATGAGAAAAACGCTGACCCCTGCACCGCCAAGAACTGCAAGTGGCCAAAGTCGGCTGACGGAAAGGTCTACGTCCCCTACGTGATCTCCCACATACATATAGTACGCCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112144 lncRNA downstream 20991 5713843 ~ 5786431 (-) False LOC113534829
TU112194 lncRNA downstream 103631 5703581 ~ 5703791 (-) True G94441
TU112137 lncRNA downstream 164486 5639696 ~ 5642936 (-) True ss18l2
XR_004578356.1 lncRNA upstream 102251 5911768 ~ 5913593 (-) True LOC117597596
TU112371 lncRNA upstream 215843 6025360 ~ 6029235 (-) True G94607
TU112372 lncRNA upstream 219792 6029309 ~ 6030675 (-) True G94608
TU112506 lncRNA upstream 421339 6230856 ~ 6231165 (-) True G94728
TU112508 lncRNA upstream 423488 6233005 ~ 6233239 (-) True G94730
XM_034305354.1 mRNA downstream 240 5805677 ~ 5807182 (-) True LOC113534712
XM_034305479.1 mRNA downstream 11366 5792221 ~ 5796056 (-) True LOC113534713
XM_026927800.2 mRNA downstream 20999 5756438 ~ 5786423 (-) False LOC113534829
XM_026927799.2 mRNA downstream 22017 5756438 ~ 5785405 (-) False LOC113534829
XM_026927798.2 mRNA downstream 22492 5756438 ~ 5784930 (-) True LOC113534829
XM_026927349.2 mRNA upstream 115014 5924531 ~ 5928298 (-) True chst8
XM_026927705.2 mRNA upstream 221899 6031416 ~ 6042803 (-) True LOC113534754
XM_026927517.2 mRNA upstream 238959 6048476 ~ 6171119 (-) False gramd1bb
XM_026927518.2 mRNA upstream 238959 6048476 ~ 6171119 (-) False gramd1bb
XM_026927515.2 mRNA upstream 238959 6048476 ~ 6171119 (-) True gramd1bb
XR_004578382.1 other downstream 1314683 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 1633828 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 2275731 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 3039124 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 3056253 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 384558 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 1055751 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 1338427 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 1632856 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 2658784 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile