RNA id: XM_034305373.1


Basic Information

Item Value
RNA id XM_034305373.1
length 4326
RNA type mRNA
GC content 0.46
exon number 30
gene id ppfibp1b
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11543660 ~ 11576988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTCACCGCCTTCCCGATTCATTGTCGCCATGGCGCAGGCGCAGGCGGAGGGGCAGCGCGGAGTTGAGGGAGAGCAAAGCTTGTGAAATTCAATTTTTACAACAAGGACGACGGAGAAAGTTCCAGTCTAACAGGATAATTTCGTTTTAGGTGGTTTCAAGTCCAGTCCGGCTTCTGGGTTAACTAAACGGATTGAAGATGATGTCTGATGCCAGTGATATGTTGGCAGCTGCTTTGGAGCAAATGGATGGCATCATAGCAGGCTCCAAATCACTTGACTATTCCAATGGGATCTTTGACTGCCAGTCTCCAACCTCACCGTTCATGGGAAGCCTGCGGGCGCTGCACCTAATCGAGGATCTGAGGGGGGTTTTGGAGCTCATGgacacagaggagagagagggactgCGCTGCCAGATACCCGACTCGACAGCACACAGTCTGGTGGAGTGGCTACAGGGACAACTATCAAATGGGCACATTTCAGTGACTGGTGATATTTACCAAGACAGACTAAATCGCCTTGAAAGTGACAAGGAATCCCTTGTGCTTCAGgTGAGTGTCTTGACAGACCAAGTGGAAGTCCAAGGAGAAAAGATAAGAGACCTAGACTTGTGCCTTGAGGAACACCGTGAAAAACTGAATTCCACTGAGGAAATGCTACAACAGgagcTTATCTGTAGGTCAGCACTTGAGACCCAGAAGCTGGAGCTGATGGCTGAGATATCCAATTTAAAGCTAAAGCTGACTGCCATGGAGAAGGAGAGAATAGACTTTGATGAAAGATTCAGAGATAGTGAGGGTTTGATCCTAGAGATTAATGAGCTGAGGTATCGCATTTCTGAGATGGAGAGCGAACGGTTGCAGTATGAGAAGAAGCTGAAGTCTACCAAGTCGCTAATGGCAAGACTGTCTAGCCTGAAAATCAAAATGGGCCAGATGGAGTATGAAAAACAGAGGAAGGAACACAAAATCCAGGCACTCGAGGAGGAGCTGGCTATTTTAAGAAGGCAGCTGGATGGTAAAGATGGAGAACTAAGGAGGCTACAGGATGAGACAGGGTCCAGATCGTCCACACCTGCAGGCTTAGAAACCACTGAGAGAGAGGATACTTTTAAGCAGAGGCTCAAAGAGAAACATTTGGAAGTGCAAAGAATGAAGAAAGCGGTTGAGTCACTTATGGCAGCCAATGAAGAGAAGGATCGCAAGATTGAAGAGCTTCGACAGTCACTTACACGTTACAAGAAGGTGCAAGACATGGTCATGTCCGTGCAGGGGAGAAAAGATaaactgaaagaagaagaaagtgatGAGAGCCACAGTGACAGCTCTCTCTCCATGTCAACGGCAATGTCGGTTTCCATGGATGCTGAAAAGTCCGTCCTGTCATGTGCTGAGGAAGTGAAGAGTCAAGATGAGCCGACGACATTTATCAGCACGCTGCATGTGTCTTCACTCACATCCACGCAACAACCCAAACTAGAGACTGATGTGAACCTGGAGCCAGTGCAGTCACAGAGTGATGCAGTGCATCAGGAGCCAAGCCAGTCACAGGAGCCCGAGATAAATACCAGTCTGGAAAGTGTGGAGGTCCCCAAATCTAGCAGCCTGACTAAACTGGATGGCAGCACTAGTGAAAAGAGGCCTTTGGCAGTTGGAAAGAGTCCAGCAGAGAGTCGTGCTTTTGATGAATTCAACAAGATTACAACTTTACCGCCGAAGTCCACTAGCAGCTCCCGTGCTGTTGAAGATGACGCTTTTGGCACAAAGAAGGCGAGATCTTCTTTTGGACGAGGTTTCTTTAAGCTCAGAGGAGGCAAGAGAACAGCCAGTGCTCCAAATCTTGcTGAGACAGAGCACGACGGCATGGACCAtctgaatgtaaatacagacggtttacctcaagatTCAAGCAACAGTgatagcacacacactctctccagctGCCTAGAGGGCAAGAAGAAGTCTAAGGGAATCAAAGCATTCATAGGAAAGCTTACAAGAAGTCAGTCAACCACATTCACCTTGGATGACAACCTATCAGAGAACGAGTTTAAGCGGGGAGGAGTCCGAGCCACCGCCGGTCCCAGGCTGGGATGGTCACGTGACCTGCACAACACTAACAGtgaggtGGATGCTCCATTTGCGCGATGGTCTCGGGAGCAGGTGTGTGACTGGATGCAGGAGCAGGGACTGGGTCTGTACGTGAACCTGGCCAGACAGTGGATTTCCTCAGGACAGACTCTCCTGCAGGCTTCTCCACAGAACTTAGAAAAGgagctggGTATCAAGCATCCTCTCCACAGGAAGAAACTGCAACTGGCTCTGCAAGCACTGGGCTCTGAAGAGGATGACAACAAGGGCAAACTCGACTACCAGTGGGTGACAAGGTGGCTTGATGATATTGGACTTCCTCAGTACAAAACTCAGTTTGATGAGGCAAGAGTGGATGGGCGAATGCTTCACTACATGACCGTGGATGACCTGCTGTCTCTGAAAGTGGGCAGTGTGCTGCATCACCTCAGCATTAAGCGAGCAATCCAAGTGCTCCGCCTCAACAATTACGAGCCCAACTGTCTGCGCCGCAGACCCTCAGATGAGAACAATATCACTCCGGCTGAAATCTCTCAGTGGACCAATCACCGTGTGATGGAGTGGCTGCGTTCTGTAGATCTGGCAGAATACGCACCCAATCTGAGGGGCAGTGGAGTCCACGGAGGACTGATGGTTCTAGAGCCTCGCTTTAATGTGGAGACAATGGCGCTGCTTCTGAACATTCCTCCCAACAAGACCTTGCTCCGAAGGCACCTGGCTACTCATTTTAACCTGCTGGTGGGCTCGGAGGCCCAGCAGACCAAGCAGGAGTGTATGGAGAATCCTGACTACACTTTACTCACTGCAACTGCTAAGGTCAAGCCAAGAAAACTGCCATTCGGGACCTTTGGGACGTTGAAGAAGAAGAGACAGGAGGATAGCGAGGAGTATGTGTGTCCCATGGACGTGGAGATGCCAAAAGGACACAGTTTCCAGAAGGGCTTCAGAGGCATGGAGCTGCACATTTACGAGGATGACCTGGACCGACTAGAACAGATGGAGGACTCAGAGGGAACTGTGCGACAAATTGGGGCTTTCTCAGAGGGCATCAACAATTTGACGAGTATGCTGAAAGATGACGAGTTCTTTAAGGAGATTGTAACATCGTCCCCCAACCCCAGCGTGACTGATGATGACTCCAATGTTTGAGGACGTTTTTTTGGGCACAACTGCCCATAGTGGTGCTGCTGTGATCAGAACTGACTGTGCCAACCTCTctgcacatctctctctctctgtctgtcagtgctAGCTATATCTTATGAGTGTATTCACCTTTTGTAAACACCTATAAAAGAACCGCAATACAGTATTTGCCACAGTACAGTGCAGAATAGGTGTCATTCTTTAAGCTAAAATATGGGTCAAGGTTGTGAATCTGTCTCCCTGGAGCAGATGTAAGATTTATTGAATAGTCAGTCTTGTCTTTGCTTGAGATTGTATGATTACAATGTTGGGCTTCAGTGACATATTTTTACAGAGAgtttttaagggaaaaaaatggcagcCCTACTGTAGTTTGCCTCCCAACTGGGGACTGGAGATTTTATGCACAGTTTTTTCTACTGGCCTTCCACTCCCATCTGTTGTGTCCATTATGGCAAACGGAGCACAATGACACTTTTAGCCTCTGAATAATAGAATTTATTTTAGGAAATGAGATTAAAATAAGcacagtttaaaagaaaaaaaaacagtcctttTAAACACTCCTAGTAAGTATTGCCAAATTCCACAATGACCATGTGATGTCtgtcatatttacatttttcttgaaATTTTCTCACAGTAtttcataaatttatacaagGTCCATTTGACCCTGAATTCTGCATATGCTTATTGATGTCTGTGTTTGCATGCAATATCTTTAACACTATGAAAACTCAGTACATGCCATGTGAAGGAATAGCGTCCCACCGAGGTTGTTTTCCTACCCATTgatcccagtgttcctgggacacaCACCGTATCCACCATGACCTTATCCAGGATAAAgacattactgaagatgaaatgtATTGAAAACTCAGTACAGTGTATTGGATGCCCTATTTGTACAGTTGCATGTTATTTAagcttttctcattttttaatattgtgcaTCAGTTAACATATCAaaattttcttattattaatcaaAGCAATGTTTTTTTGGCAGCCATActtgtgtgttcttttattatGCTCATTTGTAAAAGGTCAATAAATTAAAGTGTAGCACAGTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116033 lncRNA downstream 66546 11396116 ~ 11477114 (-) True G97831
TU115775 lncRNA downstream 352820 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 355637 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 369487 11172687 ~ 11174173 (-) False pdf
TU116158 lncRNA upstream 103741 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 114009 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 114009 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 175537 11752525 ~ 11753198 (-) False plekhg7
TU116261 lncRNA upstream 293991 11870979 ~ 11871109 (-) False sspn
XM_026927037.2 mRNA downstream 1279 11537242 ~ 11542381 (-) True endouc
XM_026927504.2 mRNA downstream 7996 11508775 ~ 11535664 (-) True polr3b
XM_034305557.1 mRNA downstream 36970 11489642 ~ 11506690 (-) False rfx4
XM_026926955.2 mRNA downstream 36972 11489642 ~ 11506688 (-) True rfx4
XM_034305558.1 mRNA downstream 36973 11489642 ~ 11506687 (-) False rfx4
XM_026927540.2 mRNA upstream 1257 11578245 ~ 11581884 (-) True si:ch211-245j22.3
XM_026927539.2 mRNA upstream 9069 11586057 ~ 11610963 (-) True arntl2
XM_026927475.2 mRNA upstream 95393 11672381 ~ 11675853 (-) True si:ch211-219a15.3
XM_034305446.1 mRNA upstream 176114 11753102 ~ 11769985 (-) False plekhg7
XM_034305445.1 mRNA upstream 176114 11753102 ~ 11769985 (-) False plekhg7
XR_004578315.1 other downstream 1248837 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1248837 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3065424 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3929564 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4386172 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 11013 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 735094 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 820699 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 844114 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1468835 13045823 ~ 13052311 (-) True G98770

Expression Profile