RNA id: XM_034305471.1


Basic Information

Item Value
RNA id XM_034305471.1
length 3211
RNA type mRNA
GC content 0.43
exon number 6
gene id hdgfl3
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 1103951 ~ 1116054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttcattcccgggcctttctctctctctctctctctctctctcttttcattatttatttccgTTATTGATGGTGGGAGATTTCCGCGCGTGCACGAATCGCGTGGTGACATTTGTGACATTTTGGGTGTTTTCCGAGCGCGCGCCATGGCTCGGCCGCGACCCCGCGACTATAAAGCAGGAGATCTGGTTTTCGCCAAGATGAAGGGCTACCCGCACTGGCCCGCGAGGaTTGATGAGCTGCCAGAGGGAGCTGTGAAGCCTCCTGCTAATAAATATCCCATCTTCTTCTTTGGCACTCATGAGacTGCGTTCCTCGGTCCTAAAGATCTGCTGCCGTATAAAGAGTATAAAGAAAAGTTCGGCAAGTCGAATAAGAGGAAAGGCTTCAATGAGGGACTGTGGGAGATCGAGAACAACCCCGGGGTCAAGTTCACCGGCTaccagagcgtgCAGCAGCAGAGCTGGTCAGAGGGGGAGGGGGCTGATGCAGCAGACCGCAGCAGTGAGGGGGAGGAAGGTGAATCCAtcggagaggaagaggaaggaaagGTGAAGGGCGAAAAGGTCGGATCCAAACGGAAAAAGACCGCATCCTCAAAGaaGTCAAAGCTGGTCAGGAAGTGCTCggctgaggaggaagaggagaaggacGGTAAAGAAGACGAGGAGAAGAGAGACAACGATAACGACCTGCAGAACTCAGACAAGAAGACGTGCTGTCCAGGAcagAACCAGTTGCTGCGAGAGGAACATTAGATCCTGAAGAACATCTGATCATGTTGTGGTTTGTTCTGTGATGTTGGAAATGTAACTCGCTTTGACATCAtcaacataaaaaagaaaagaaaagaaaaacattatgttataataaaatcactgatcagtaaataatattaaagcCACAAGTACAGAGAAATTCATCCACGTCTCATCAGCAGAGCCAAGCTGAAGCTAACGCACGTAGAATTAAAGGGGCGGTAAGCGATATTCTCCATTACAGATGCAGGTTGGGAAGTTGTGTTAGAAGGCGGTTTTGTTGTTCCACGTCGCAGAgtcagtgtgtaaagtgtgaatTCGGCTGAAATGTTGCTTACTGCCCCTTTAATGTGCAGTGTTAATGAACACTTTATCAGATGTAATATAGTCATCAGTTTAGCGTAATGTTCTAGCTGTAGCTGTTATAGCTGGAGTGTTCGCCTGGAAACCAGCCCACTCTCTCTCCTTACACCCTCTGACCTTTCACTCTGAACTCTGACCTTTCACCCTCAACCCTTTTCATCTTAATCCTTCACTTTTTACACTAAACCCTGATCTTTGACCTTTCACCCCAACGTTTCATCATAAACCCTGACTGTtcacccccaaccccaaccttTGTCTCAAATGCTGACCTTTCACCCTAACCTGACCTTTGCCCTTGAATATTAACCTTGACCCTTAAACATAACACTGGTCATTTTTTTGCTGCCTTTCTGTAAGCTTTTACTTTAACACTATCTTTTAAATGTAAgctctgacctttgaccctaaccctgacctttTAACCCTGAGGTTTTTTTCTTGCTAACCCTTAGGTTTGACCTTAAGCTCCTTAACTAAACCCCTGGACGTTTACTCTAAGCCCTAATCGTTAACCCTAATGCTGACCTTTCACCCTGACCTGACCTTTGTCCTTAATTTTGACCTTTTGCcctattactgtttttttcttcatgacctctgacctctgtctGTAACCTTTGTTCTAACACTACCCTTTAAACCTAAACTCCTATCTTTGACCTTAGCCTTGACCTTTCACCTCAAACCCTGACCCTCTTTCTGAAACCTTTACGGTAAAAAACTTCCTTTTGAACCTTTGACTTTTCAACCCAGATTTTTTTTACCACAATCTTTACTTTGTTTTGCTAACCTTAACCCTTGACCTTAACCCTTGACCTTTCATCATTTACCTTAAACCCTAATATTTGACCCTAGCCTTGACCTTTCCCCTTAAACCCCTGCCCTCTTTCAGTAACTTACCCTAAATTACCCTAACCCTACCCCCTGTACCTAAACTCTGACCTTTCAACCCAGGGGCTTTACCCTAAACCTTCACGTTTCTTACCCTAACctatgacctttgaccttaaAAAATTTCATTACTCTTAACCCTAACCTGTCACTCTGACCTTTCAGTCAAACTCTGACCTTTTACCTTAAACTGTCATCTTTTATTTCAACCCCTGATCTTTATCGGCACTCTGCAGTCTCTTCTTTGATCTTTTACctgctgacctttgaccctgtcCATGCTGTGTGTATAAACCCGTGAAAGACAGgccgcgagagagagagagagagagagagagagtgatgagtATAAATAGTGGTTTTGAGTAACACACTGTTGATGGTTTGAGTTCATGTTGCTGTAGAATTCGGGACCACGCTAACAGATAAATGctcgtttgttttttttgttgttttttttttctttttttttcttcttcttttttttttataaataaagtgacTTCTGGTTCCTGTGTCTGTGCGCTCGCTTGTTTCTTAGCTCTTTAGTGGCATGCTGTCTGTCCTATTAATTCTGTAAGATAGAAATCATTCGGAGATTAGCGCTGAGTCTGAGGCAGGAAGTGTCTCCTAACGTTTAGCACTTCATAACGTCATCACTCAACTGAAGACGCTCTTTTACTTCCTGATCTGTGtttatataaagaatatattctatttatttttgatgatgGTAGATGACACATCTGTGGTAGGTGTTAGCGCATTCGCATGTCCTGATTTAGTCACATGACACGTGTTTCTGCGTcagtgtgggcggggcttaaagtGATCCTATGACATCATTAGGGAGCCTGCTGGTACAAACAGCCGACTTCCTGTTATATCACGTAATTACACTCGAGCGTCAAgccaaagaataaaaaaaatcttgaggTGATGTCACACAATCGAGTccactgattggctgatgggatTTACCGTAAGCCCCGCCCCTTGTTAACTCGAACATGCCTGTCAGTGAGTAAAATCAGGACGTAGAGATCATCAGTGTAGATTTTTTGCCCCTCCTTATCTTTGTTATGCTCGTTACAGTTCTATCTTACATTTTCAACGTTTGTAGTTCACTGTAAActgtttttcctgtttattcACAAGACTTTTACAGAATAAATTTGTTGGAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109728 lncRNA downstream 87769 1014447 ~ 1016182 (-) True G92359
TU109711 lncRNA downstream 119430 982501 ~ 984521 (-) True G92343
TU109605 lncRNA downstream 127402 970248 ~ 976549 (-) False G92282
TU109649 lncRNA upstream 33485 1149539 ~ 1216437 (-) True G92294
TU109581 lncRNA upstream 81105 1197159 ~ 1292493 (-) False bloc1s6
TU109792 lncRNA upstream 172647 1288701 ~ 1295898 (-) True G92412
TU109844 lncRNA upstream 220837 1336891 ~ 1341381 (-) False G92421
TU109845 lncRNA upstream 220837 1336891 ~ 1341381 (-) False G92421
XM_026914301.2 mRNA downstream 18638 1082696 ~ 1085313 (-) True LOC113526880
XM_034305122.1 mRNA downstream 29048 1056705 ~ 1074903 (-) True homer2
XM_034305121.1 mRNA downstream 29942 1056705 ~ 1074009 (-) False homer2
XM_034305120.1 mRNA downstream 29944 1056705 ~ 1074007 (-) False homer2
XM_034305118.1 mRNA downstream 62534 1034949 ~ 1041417 (-) False LOC117597537
XM_034305508.1 mRNA upstream 9577 1125631 ~ 1149797 (-) True bnc1
XM_034305212.1 mRNA upstream 81081 1197135 ~ 1201725 (-) False bloc1s6
XM_034305211.1 mRNA upstream 81081 1197135 ~ 1201723 (-) True bloc1s6
XM_034305524.1 mRNA upstream 106848 1222902 ~ 1226351 (-) False c6h15orf48
XM_034305319.1 mRNA upstream 111553 1227607 ~ 1234626 (-) True spata5l1
TU109708 other downstream 114895 982067 ~ 989056 (-) True G92340
TU109707 other downstream 114895 983467 ~ 989056 (-) False G92340
XR_003402800.2 other downstream 257016 836494 ~ 846935 (-) False slc27a2a
TU109528 other downstream 356421 707760 ~ 747530 (-) False G92240
TU109527 other downstream 393297 706750 ~ 710654 (-) True G92240
TU109770 other upstream 106667 1222721 ~ 1226302 (-) True c6h15orf48
TU109955 other upstream 399684 1515738 ~ 1531062 (-) False LOC113525562
TU109967 other upstream 511747 1627801 ~ 1644217 (-) False sema6dl
TU109968 other upstream 512575 1628629 ~ 1648286 (-) False sema6dl
TU109993 other upstream 652351 1768405 ~ 1768795 (-) True G92531

Expression Profile