RNA id: XM_034305501.1


Basic Information

Item Value
RNA id XM_034305501.1
length 3249
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC113526680
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21467974 ~ 21492481 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTCGCCTGAATACGGGTGGGGAAACAAAAGAACACCTCTCGCCAGGGCTTCGACCATTTTCAGCGTTCAGTGGTTACAAGGCAGTCTGAATTTCTTCTTGCTTTTGCAAAGTTTGCAAGGAAATTGGAGAAAAGCGatgtGGAAAGCAGCAGCTGGTCGTTCCGTCTCCGTTACCGTTGACGACGGTCCCGATGACTGGGAGACGGATCCTGACTTTGAGAATGATGTGACTGAGAAAGAGCAGCGATGGGGAGCGAAAACAGTGGAGGGGTCCGGACATCAGGAGCACATCAACATCCACAAGCTGCGTGAGACGGTGTCGTCTGAGCACAGTGATCTGAAACAGCGTGAGCTGGAGAACATGCCCAAAGCCTCGCATGGCTACGGAGGGAAGTTTGGTGTTCAGGAGGACCGAATGGACAAGTCAGCTGTGGGTCACGAGTATCAGAGTAAACTGTCGAAGCACTGCTCCCAGACAGACACGTCTAAAGGCTTTGGGGGTAAATTTGGAGTTCAGAGTGACCGCGTGGATCAGTCTGCTGTAGGGTTCGAGTATGCTGGGAAAACAGAGAAACATGCCTCTCAGAAAGATTACACCACTGGTTTTGGGGGTCGGTATGGTGTTCAGACTGATCGTGTGGACCAGAGTGCTGTAGGCTTTGATTATCAGGGAAGAACGGAGAAACACGAATCCCAGAAAGATTATTCTAAAGGATTTGGTGGGAAATACGGAGTGGAAACTGATAAAGTGGACAAAAGTGCTGTGGGCTTTGAGTATCAGGGCAAAACGGAGAAACACGAGTCACAGAAAGACTATGTGAAGGGCTTTGGAGGAAAGTTTGGCGTGCAGACGGATCGTGTGGATAAATCCGCTCTTGGCTGGGACCATCAGGAGAAACTGCAGCTTCACGAGTCTCAGAAAGATTACTCCAAAGGGTTTGGAGGGAAATATGGAGTGCAGAAGGACCGAATGGACAAGagtGCAGGAACGTTTGAGGATGTTGAGAAACCCACTGCTGCTTACCAGAAGACCAAACCAGTTGAAGCAGGCAGAGGAACAGGAAGCATTAAGGCTCGTTTTGAGAATCTGGCCAAGCAGAACGAGGAAGAGGACAAGAAACGGGCGCAGGAGGAGAGAGCCAGACGACAAGCCAAGGAGAAGCAGGAGCAAGAGGAAGCTCGCAGAAAggcagagGAGAGCACCAAAGCTAAAGAGCCTTCCCCTGAGCCCagccccaccaccaccactcaGACCTACCAGTATGAGATTCCTGATACACACGAGAAGACGGAGGAGACCAAGGAGCACGTGTATGAGGTAGAGCCGAGCACAGAGCATGAGGACCTCTACCTGAATCCAGATCAGGATGATCAGTACCAGGCTGCAGAAACTCAGTCTTATGATTATGGTGAGGACCTGGGAGTGACTGCTGTGGCTCTGTATGATTATCAAGCCAccgGTGATGACGAGATCTCCTTCGACCCCGATGACATCATCACCAACATTGAGATGATTGATGAGGGCTGGTGGAGGGGCGTGTGCAGAGGGGCTTACGGACTTTTCCCAGCCAATTACGTTGAAGTCCGGCAGTAAGCCCTGCCCATTGGCCACGCCCATCTCCCTGGAGGAGAGGGGATCTGCTTTGCACATCTGTCCATTTGTATCCCTTCATTTTCCTTCGCCTCTTTGCAATGCTTTAGGCATTCTCAggtctttcttctctcttcctgCTTCATCCCTTCCCATTTCTTTGCCCCAGAATAAGCCCTGCTGTATAACTATTCCTGAGCAAAAtcttccttcattatcacactttcctctcctctttgttcctgtaacatttaaaaatagtgtAGTCCATGATGGCACCAACATGCAACATAAGTGATCTACTGAGATAAAAATCTTGGCTTTGGGTTTTATTGATTGTGTACATGAAAGTGTAATGCAAGCGTGTGAAGAGGCTATGACTTCTAACAGGTGGTGTATTTTGCAAGGGTTGGTGGGAGATTTGGTGTGATCAACCAAAAAAATGATGCTTTACTTGCATGTATTGGAAAGGGAATGCTGTACATTTTTTGGTGGAGAGGCAAATGTATGGATTTGAATGTCTGTCAAAAGTACTTGTACATTAATGCAATCCAAAATCGTAAAAATCATGATAATTATTTACACTTTTCATGGGTTTGTACTTTATAGATTTGCGCACATTGCCACATTGCATATGTAGTTTTGCTGGTTTAGAGCTGCAACTTGTACATTGTGGTGTTTCAGCTCTTCTCTCTGCTTTCATCTCTCTGTTTTCAGAGTACAATAACAGCTGAACATTTACAGATATAATTATGAAATTGCAATTACAAAAATGTTATCTTTACATTGATAAAATACCAGCCAAAATGACTggtattatatttcatttaaatgccaTTGCATAGTCTGAGACACTCTGCAAATCCTTTCGCACAAAGTGAATCTGTAGCTTCTTATCTTGACATGTTCGGCATTGGCAACactaatagaaaataaataaataattgtataatGTGACCAAAAATATAACACTAAAATATACTATAACTTACTGGCATGCAATAACCAAACTGCTACCAGCTGAGTTCATTccatttgttattttgttttgtgaaatgtgGAGTGAGTCTGAGCAGGAGGAGAAATGTAGATAAGATCTCTTTATGTGCGTCCTGGGCATGCAGTGTTTACGTCTTTTGTCCTTGTCGATGTACTTGTGGTTTATAACTCAGAGCCACTGCATTGCTTTCTTCCTGACCAACACAATGTTGAGAGGTATTATGTCTGAGTCTGCTGGATTGAGTGCACTTTTGGTTTGGAGTTGGCCTAATAAtggctgtgtcccaaaagtGAAACCTGAACAGAATAATGACCATCAAGATCTCTTGGTGTAACAAGTTCTAGCATTTGGGACGTAGCTGACATCCTAAAGATAAGTACGCGTGAATTCCAGTGTTTGGAACAGAGCTGATATATATATTGATCTTATCTGATGATATGTAACAAATCCATtctggtgcagtgggattttaattcattaatgatgCATCCATGGCTAAGTAGCAGCAGCTAATCTTTTGGGTTTGGGGTTTTATAAAAGTGACCTTCTCAgatctgttatttttatttgtatcttGCTGGCTTACCTATCATtacatgccttttttttgtatgaaatgaaatttcaattaataaaacatgGATAGTTGAAATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121720 lncRNA downstream 148422 21318140 ~ 21319552 (-) True G102808
TU121721 lncRNA downstream 155506 21309303 ~ 21312468 (-) True G102809
TU121581 lncRNA downstream 343019 21123315 ~ 21124955 (-) True G102691
TU121483 lncRNA downstream 464194 20995525 ~ 21003780 (-) True G102600
TU121291 lncRNA downstream 781789 20638871 ~ 20686185 (-) True G102458
TU121921 lncRNA upstream 77950 21570431 ~ 21652774 (-) True G102983
TU122044 lncRNA upstream 303292 21795773 ~ 21796243 (-) True G103099
TU122103 lncRNA upstream 731104 22223585 ~ 22224021 (-) True G103156
TU122105 lncRNA upstream 731848 22224329 ~ 22224564 (-) True G103158
TU122106 lncRNA upstream 735147 22227628 ~ 22227863 (-) True G103159
XM_026914172.2 mRNA downstream 218471 21149063 ~ 21249503 (-) True LOC113526809
XM_026914173.2 mRNA downstream 218472 21149063 ~ 21249502 (-) False LOC113526809
XM_026914175.2 mRNA downstream 330693 21127948 ~ 21137281 (-) True esrrd
XM_026913450.2 mRNA downstream 447433 21013235 ~ 21020541 (-) True blvrb
XM_026913492.2 mRNA downstream 454874 21006447 ~ 21013100 (-) False sertad3
XM_034305085.1 mRNA upstream 2641 21495122 ~ 21574846 (-) True ppfia1
XM_026913538.2 mRNA upstream 131372 21623853 ~ 21634557 (-) False LOC113526476
XM_026913536.2 mRNA upstream 131372 21623853 ~ 21634557 (-) True LOC113526476
XM_026913317.2 mRNA upstream 149157 21641638 ~ 21664327 (-) True serpini1
XM_034305154.1 mRNA upstream 738967 22231448 ~ 22306769 (-) True si
XR_004578325.1 other downstream 454874 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 501064 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 1487715 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 2117031 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 3271168 18187447 ~ 18196806 (-) True G101178
XR_004578321.1 other upstream 742222 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 2098464 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 3131035 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 3260131 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 3892844 25385325 ~ 25548928 (-) False si:cabz01090165.1

Expression Profile