RNA id: XM_034305519.1


Basic Information

Item Value
RNA id XM_034305519.1
length 2410
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113534596
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4109671 ~ 4112923 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCTACCAACAACAGACTACAGAAGCAAACCTTTGGCAGCACAGTGTCAGGGGTTTGATTCCAGGGCATTACGCTGGGCTTTGACAATGAGGCTTGCTGTAGATGAGATCAACAACAGTACAGTTCTTCTGCCAAACCACACTCTGGGATACAGGATCTTTGATTCCTGTGCTACTCCGGTTACAGCTCAGAGGGCAGTCCTGgctgtactgaatgaccaggatGTTGGTCAGGCCTCATTGTGTACTCATGGTGGTCCTTTACTCGCCATAGTTGGAGAATCTGGTTCCTCACAATCAATCGTTGTCTCTAGAACACTGCAACCTTTCAGAATACCTATGataaGCTACTTCTCAACCTGCTCTTGTCTAAGTGATCGTAAACAATTCCCTACATTTTTTAGAGTAGTCCCGAGTGATGACTACCAAGTGAAAGCCATTGCTCAGCTCTTGAAGAGATTTCACTGGACATGGATTGGAGTGGTCACTGAAGACCATGATTATGGCAGGTTTGCTTTACAAGGCCTGAAGCGAGAGATAGAAAACACTGATATATGTCTGGCATATCATGAAATGATCCCTAAAGATTTCAAGAGGGAGCGGGTCCATGAGATTCTAAACGTGATGAAACATTCCACAGCAAAGGTTGTGGTGGTGTTTTCAGGAGAAGGGGAGTTTTACCCTTTCTTAAGAGAATTTTTAACTCAAAATATCACAGGAATCCAGTGGGTAGCCAGTGAGGCCTGGGTCACAGCCTCAATATTAGCTGAAACATATCCATTTTTAGCTGGAACAATTGGATTTGCTGTCCGCCAAGGGTATGTGCCAGGGCTGAAAGAATATCTGATGACAGTAAACCCACAGGTGTACCCATCTAATCCCCTGGTGCAGGAGCTGTGGGAGGCTCTCTACAGCTGcacttctttctcttcttctgtcaGTAGTACACAACTGCCCCACTGCACAGGGCAGGAAACAATAAACAAGCAGCATTCTGCCTACATGAACACCTCCAACCCTCGTGTCACTTATAACGTGTATAAAGCAGTATATGCCATTGCTCACTCCTTACATAATCTCTTTCAGTGTGTGCCTGGAAATGGACCTTTTGATAATTCCGCATGTGCGGACTTCAATGATGTTTATCCATGGCAGCTTCAACATTACCTTCAGGAAGTGTCTTTCTCAATCTCTGATGAACATGTAAACTTTGATATAAGAGGAGATTCGATTCCATCTTATGATCTGATCAATTGGCAGAGACTCCCAAATGGAGACATTGACTTTATCAAAGTGGGACTTTATGATGGTGCAATGGATGCTGGGAAAGAACTGGTTATCCAGGATCAAAAAGTAAAGTGGCCCGGTAATCAGAGTAAGGTGCCAGTATCCATTTGCAGTAACAGCTGTGCTCCGGGATTCAGGAAAGCTGTTCGTCATGGGGAGCCTTTGTGCTGCTTTGACTGTGTACCATGTGACAGTGGCAAGATTAGTAATCAGACAGATTCAATAGACTGCATGGCTTGTCCTGAAGACTATTGGTCCAATGCAAAAGGAACAGTATGTATCCCCAAAGTCATTGAGTTCCTGTCCCACAGGGATACAATGGGAATTGTCTTGATGGTGATAGCTATAGTGGGGTCTTGTCTGACAACATCTGTGCTAGCAATATTCTTGCATAATCGAGGAACTCCCATAGTGCGCATTAACAATTCAGAACTGAGCTTCTTCATCCTGTTCTCCTTGACCCTGTGTTTCCTGTGTGCATTGATCTTTATTGGAGAGCCCACATCCTGGTCATGCATGCTGCGCCACACTGCTTTCAGCATCACCTTCTCCCTCTGCATCTCCTGCATCCTGGGTAAAACCTTAGTGGTTCTTGCTGCCTTCACAGCCACCCAGCCTGGTAACAATGTGATGAAATGGTTCGGGCCTACACAACAGAGGATCATCATCTTTAGCTGCACCCTGATCCAGATGATCATTTGTGCTGCATGGCTCATATCCTCCCCTCCATTCCcctacagaaacacacagtatcAGCGCTCTAAGATCATTCTGGACTGCAGGGTGGGATCTGAGTTGGCCTTCTGGTGTGTACTAGGCTATATTGGCATTTTGGcctgtttgtgtttcattttggcCTTTCTGGCTCGGAAATTGCCTGGAAATTTTAATGAAGCTAAATATATTACTTTTAGCATGTTAATTTTTTGTGCAGTGTGGCTGGCATTTATACCTGCCTATGTAAGTTCACCTGGTAAATTCACTACTGCTGTtgaaatatttgccattttagcCTCTAGTTTTGGCCTCCTTTTGTGCTTATTTGCTCCAAAGTGTTATATTATTTTAGTCAAACCTGAAAAGAATACCAAACAACATCTAATGGGAAAGgcaacaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111341 lncRNA downstream 36138 4073215 ~ 4073533 (-) False LOC117597611
XR_004578346.1 lncRNA downstream 163295 3944987 ~ 3946376 (-) False LOC113534402
XR_004578345.1 lncRNA downstream 163295 3944987 ~ 3946376 (-) True LOC113534402
TU111281 lncRNA downstream 374279 3735097 ~ 3735392 (-) True G93639
TU111190 lncRNA downstream 528465 3579017 ~ 3581206 (-) True G93557
TU111357 lncRNA upstream 42334 4155257 ~ 4155497 (-) True G93707
TU111360 lncRNA upstream 59150 4172073 ~ 4172312 (-) True G93710
TU111366 lncRNA upstream 70832 4183755 ~ 4183993 (-) True G93716
TU111372 lncRNA upstream 104655 4217578 ~ 4217842 (-) False LOC113534736
XR_004578376.1 lncRNA upstream 118537 4231460 ~ 4231831 (-) True LOC117597614
XM_026927500.2 mRNA downstream 612 4105227 ~ 4109059 (-) True LOC113534597
XM_034305340.1 mRNA downstream 9616 4093602 ~ 4100055 (-) True LOC113534741
XM_034305339.1 mRNA downstream 17012 4085122 ~ 4092659 (-) True LOC113534742
XM_034305338.1 mRNA downstream 31209 4076658 ~ 4078462 (-) True LOC117597565
XM_034305337.1 mRNA downstream 33030 4075256 ~ 4076641 (-) True LOC117597564
XM_026927693.2 mRNA upstream 10899 4123822 ~ 4126781 (-) True LOC113534739
XM_034305058.1 mRNA upstream 18342 4131265 ~ 4134060 (-) False LOC117597529
XM_034305057.1 mRNA upstream 18342 4131265 ~ 4134060 (-) True LOC117597529
XM_026927535.2 mRNA upstream 24237 4137160 ~ 4140602 (-) True LOC113534615
XM_034305341.1 mRNA upstream 30308 4143231 ~ 4149410 (-) True LOC113534616
XR_004578380.1 other downstream 577980 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1341373 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1358502 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2340876 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 2461385 1628629 ~ 1648286 (-) False sema6dl
TU111361 other upstream 60365 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 379623 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 2081152 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2752345 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 3035021 7147944 ~ 7157488 (-) False LOC113534453

Expression Profile