RNA id: XM_034305523.1


Basic Information

Item Value
RNA id XM_034305523.1
length 2543
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC117597612
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7415467 ~ 7418874 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGACTGTCTCTACGTGTGACAACATGGATTCCAGACCCTCTCTGACTGAAGATGATTTCTCCTGTCCTGTGTGCTGTGACATCTTCAGGGAGCCTTTACTCCTGGCCTGCTCCCACAGCATCTGTAAGAGCTGCCTGCACACCTTCTGGCAGCAGCGAGGAGCTCTAGAGTGTCCTATCTGCAGGACCGTGTCCTCCACTCCTGAGCCTCCGGTGAACGTCGTGCTGCACAACATGTGTCAGGCGGTACTGAAGGAGCGGAACCGGCGGATGTCAGTGGAAATGGAGGGGCTCTGCAGTATACACCGTGAAGCTCTTACTCTGTTCTGCATAAAGGATCAGAGGCCTCTCTGCACCAAGTGCAAGAACTCCAGATTACACAGCAACCACACTGTCTGCTCCATACACGAAGCATCACAAAACCTCAAGCACGCACTTGAGATGAAACTGAAGCCCTTACATGAGAAGACTAAAATATATGAGGACTTCAAACAGTCCTGTGTTAAAACTGTAGAGCACATTATGCAGAGTCAAAACACAGAGGCATTGATCAGGGGGGAATTCAATAAGTTTCACCAGTTTCTCTGGGATGAAGAGGAGGctagaataacagcactgaaagaggaagaggagcagagAAGTCAAACAGTGAAGAAAAAGATTGACAAGATCACAATTCAAATAGCCAGCGTCTTGGACACCATCAAAGCCACTGAGAAACAGATGCAAGGAGAAGATTTGCTATTTCTTTTGAACTACAACACTTCACTTGAAAGAACTCAAGCTAAACTAGAAAATCCAGAGAAATTATCTGGAGTTCTGATCAATGTGGCAAAGCATCTGAGCAACCTGAGCTTCCAAGTGTCAGAGAAGATGCACAGCTTTGTACAATACACCCCTGTGGTGTTTGACCCCAACACTGCCCACACTGGCCTCATAGTGTCTGATGATCTGATCACGGTGGCTTATAAAGGCGAGCTTCAGCAGCTTCCTGATAACTCAGAGAGGTTTGAGGGTTATGTGAGTGTCATAGGCTCTGAGGGCTTTAATTCAGGCACACACTGGTGGGATGTTGAGGTTGGAGACAACACAGCCTGGGCTGTGGGAGTCATCTCAGAGTCTGTGTATAAGCACAGAGAGAACCTCTCACGGTTTGGTCTGTGGTATGTTGGCTTCTGCAATGACAAATATGGTAAAGGATATGCACCTGAGATCCTGACACTGTTGCGGGTTAGTGAGAAGATCAAGAGGATCAGGGTGCAGGTGGACTTTAACAAGGGCAAGGTGATCTTCACTGACTCAGCCCGTAACATCTGTCTGCACATCTTCAAACAATCTTTTAAGGAGAGAGTTTTCCCTTACTTTTACAGCCACTGCAAACTCCATCCTCTGAGAATATTACCAGTAAAGTCCTCAGTGACCATTCAGATGGGCAGTTAGATGATACCAGACACAACGAGTTAACTTAGGCTAAACAATAATTTagagcagtggtggctcagtggttaatgtGCTGGCCTCTTACTCAGAAcattatgagttcaaatccctgaATTGCTAACCTGCCACTGATTGGTCCGTGAGCAAGGCCTGTAGTTcctgctgtatcatggctgtcCCTAGTTTTCTAACAGTACAATATTTCACTGTATTGTACAAACATGTACATGTGACAATAAAGTcagtgattaaaagaaaaatcaatgaTCATAGAACACTGGAAGGGTCAGGGATGTTTGTGTAGCTAATAGTGGTTTTGAAATGGTGTGCCAGTGCAAGTTATCACATTCaataataaagcaataagccaTGAGAGGGTGGACGCTGTATTGACTTTATCTCAGGGAAGGGTGTAAAACATACTTACCCATGATAAAATCACTACATCTGACTACACTGATGTTCACTACATATtagaatgcttttttttacaaCTTAGAGTAAAAGTTAATCTTGCAGCAGTAGCTATGAGGTAGATGATCCAGCATCTCTGCagccacataaacacattttggtgagcagcaatttattattacacagaTTGTATTTACATAACCCCTAGTCACACATTTAGCATATTCATTTTTGTCTTGCATTTACAGATAATATTTAAGTACATATGGCCCTGCAAGACCTGCTAAGGGACATTCCTCACAAAAGAAAGACTCTGTCTCAGAACAGCAGGCTCAAAGCTCAGATAGATATAATGCTGTCAGATGATGAACATTAAAAGCATAATGTTACACATCTGTGACAAATTATTGATTGCAAATCGAGTGTGCTGTGAGGTACAGAGTCAGTCTGCCAGGACTTTTCCTTTACAGTGCCTAAGACACATCCAGcagatgtttttaatgtgtttgctAATACATGTTTTAGGATATTGTCTTCTCTCAGTCATTCTATAGCAAAGCAGAAGATAAAGGaaacattacatctactgtcaGAAGAGTGTGACTATTTATGATTTCCCCTTCAACTGCTTAATACTTCTGTGTGCTCAGCATAACATTAAAGTAAACACTGTGTCTATCCACTACTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113311 lncRNA downstream 78901 7336365 ~ 7336566 (-) True G95440
TU113068 lncRNA downstream 87764 7327488 ~ 7327703 (-) True G95227
TU112878 lncRNA downstream 327426 7086511 ~ 7088041 (-) True G95066
TU112884 lncRNA downstream 412833 7001648 ~ 7002634 (-) True G95072
TU112768 lncRNA downstream 745860 6664855 ~ 6669607 (-) True G94975
TU113344 lncRNA upstream 1754 7420628 ~ 7421851 (-) True G95460
TU113383 lncRNA upstream 59998 7478872 ~ 7479107 (-) True G95482
TU113668 lncRNA upstream 297715 7716589 ~ 7794006 (-) True G95752
TU113669 lncRNA upstream 297715 7716589 ~ 7794006 (-) False G95752
TU113700 lncRNA upstream 401516 7820390 ~ 7859029 (-) True G95773
XM_026927469.2 mRNA downstream 12350 7399292 ~ 7403117 (-) True tsen34
XM_026927001.2 mRNA downstream 17825 7391865 ~ 7397642 (-) True bcl7bb
XM_026927125.2 mRNA downstream 25419 7376141 ~ 7390048 (-) False baz1b
XM_026927124.2 mRNA downstream 25419 7376141 ~ 7390048 (-) True baz1b
XM_026927482.2 mRNA downstream 104087 7296120 ~ 7311380 (-) True trpc6b
XM_026926949.2 mRNA upstream 3098 7421972 ~ 7425581 (-) True LOC113534276
XM_034305464.1 mRNA upstream 19217 7438091 ~ 7694427 (-) False shank3a
XM_034305465.1 mRNA upstream 19217 7438091 ~ 7694012 (-) False shank3a
XM_034305463.1 mRNA upstream 19217 7438091 ~ 7614096 (-) False shank3a
XM_026927729.2 mRNA upstream 19217 7438091 ~ 7614096 (-) True shank3a
XR_003403498.2 other downstream 257979 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 550128 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1221320 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2922728 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 3241873 4173288 ~ 4173594 (-) True G93711
XR_003403522.2 other upstream 23499 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1049427 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2849603 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2849603 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 4169127 11588001 ~ 11610964 (-) False arntl2

Expression Profile