RNA id: XM_034305535.1


Basic Information

Item Value
RNA id XM_034305535.1
length 4793
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC117597613
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4226231 ~ 4231317 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGAAATATCAACAACTCCGAGGCCGGTGAGGCCGCAAGTCGCGAGCGTGACACCCATCTTAAAAGCCTGTGACGCACCTCAGTGAGCGAAGAGAAGGAGATTAGTCAGTAAGACACTGTCGCTAGTGAAGCGGTTGTTTacagATTCAGTCGAATCACCCACATGGTCACCCGCGTGTTCAACCAGGGAAAGGGGTCGTGGATCTCAAAGCGTGATTAACGagACCGAAGCGGAGACCGAAGCGGAGACCGAATCAGATAACGGCCCAGAACCGAATCAGGAAGCAGAGTGATGTCGGAGAGAGCGCCAGAGTCCCACTAGACCTCTGTTTAAGCGCAGGTTTCCTCAACGACGGAATAACGccaacGTCTCTAACCAGGAAGCGAGACCTGATCGGGTCCGTCGGCTGAGAATAGCGCCACCTCTCCGccagcactttttatatatatataaaacacatatcatttaaaaaaataaaaaatacatatataatttaaaaaaaaaaaaaaaaaaaaaaggatgagacTTTAGAACGGGTCCTGAGCATAGAAGGGTTACGGCTTATCCGCCCCTCCTTTCGCATAGACATGCGGCAGGACATATACAATAACGCCTCGATGATTCAGCAAGATCCTCTACAGGCGATAGAAAATGCAATCCTCTGTCTAAATAGGCACGATGATCCATTTCTGGAAATCGAGGCTGCTATTCGTTCTATAAGCACagaagaggaggaaagaggGCAGCACGGTGAGGGGGTAGAAGGAGGTGTGGAGGGTGAGGGGGAGGGAATAGAGGAAGAAGTACCAGATGGAGGGGTCGTGGGCGAAGCGGTAGAAGTACCAGAAGGAGGGGTCGTGGGCGAAGGGGTAGAATTGGGAGGAGGGGGTGGAGGGGTTGGGAGCGGTGCTGATAGTGAAGAGACGcaggcaggaggaggaggaggtgaaagAGAAATCAATGTCACGACGCACGAGAATTTTAATACCGTAAAAATGAGACGCATGTTAACAATCCCTCCACCAGGGGATGAGCCTGATATCGCTACGTTTTATCAAAACGTGATCGGTCTCATTCGGGAATTGGTCGACGACGCGAGAGCCGTAGCTGGGAGGCGGGACTTGGTACAGTTAAGTGTAGAGGGTGAAAATGTAAGAGTTCACGCGTCGGTAGTTGCCGACGGCACGGGTGAAAATATTCTACCCGTTTTTGAAGATATGCTCGATCGGTTAGTACAGTCGAACACTTGGGTTGCGGCAAACAAAAGAGTGGATCTGATTGTTCAGGTGGTGCGGAACCCTAGAGGCGGGGGAAAACGTAAGTTGGAGAAAACTTTAGACTGCGAAATCATACGTAAAAAAAGACGTCACCTGTACGTTACAGAGGACCGCGGAGATCAGCTTTGCTTCGCCATCAGTCTAGCTCACGTGTGTAACGGCAGTTTCACAGACAGGCAGTGCGAGAGACAAGCTAGAGAGTGACAGCGAGCCGTCGGTCTGGACGAGCAGACACCCGTCACCTTTAGCGACGTGCGAAAATTCGAAGACATTTTAGAACGTAAAATTGTAGTGTTTTACAGAACGTCTAGCACCCTCTCGCATTTCGAAACAGATTTCCCCGACCGTTCCcaaactttgtttttgtttttactggatAACCATTATTACAGGATAAAAAACCTTAAGGGTTTTATAGGTACGCGATTCGTCTGTAATTATTGCTACAAGGGTTTTAATTGCTCCTATGTGCATTCTTGCCGGGGCTATTGTCATATTTGTAACAATGGGGAGTGTCCCATGCAAGAGTACAATCCTGTAGAATGCTCGGACTGTCTCAGAAAGTGTCGTTCCCCAGCGTGTTTCGCCCGTCACAAAGAAGGTAAGAGGAACTTTGTAACGGGTAGGTCGGTCAATCTCTGCGAGCTCGTTAAAAAATGTGCTAGATGCGGCCTGTGTTACAACACAGGACCGAACACCCGTGTAGGAAATGGTCATCGTTGCGCTAAACCGAAATGTAGAATCTGTGGGGAGACGTTAACGAGGGAGCTGGAAACTGACCACAGGTGTTACATTCGCCCTCTCCCCGTGAGCGCCGACCATCCCGATTTGATTTTTTATAACTTTGAAACGTTCGCCACAGAGAACGGCGTGCACGTACCTTTTCTGGTGTATGCGAAAACATTGAAAGGCGAAGAGAAGTGGTTTTACAGTCATGGGTGcgttaaacattttcttatgtatttcagaaatgagCGCTACAGACGTAACGTTTTTATAACTCACAATGCCAAAGGGTTCGACAGCTATCTGGTTTTGAAAGGTATGCTGAAAGAGGGGTTATCGCCTCGACATATTCTCATGACGGGGAGTAAAATCCTCAGTTTTGAAGACCCTCATTATGGGCTAAAATTCATagactctctgtctttcctacCCATGCGTCTTAGCGATTTCCCAAAAGCCTTAGGTTTCACCGATCAGACCAAGGGGTATTTTCCTCATAAATTCAGCTCGGCCGAGCGTCTCGAGTACGTAGGACCCTACCCACCCGCCTCCGATTATGGGGTAGAACGCATGTCGGAGTGGGAACGTCAAGATTTTCACGAATGGTATGACATGGCTGCGCGGGGCGTTTTTAACTTTAGGAAGGAAGCTCTGCATTATTGTAAAAACGACGTGGTTATACTTTCCCAGGGTTGCATGAAATTCAGAGATCAGTTTCTCGGAGAGATGGGGGTGGACCCGTTCGATTCAATCACCATAGCGTCAGCCTGCATGAAAGTGTTTATCACAAATTATATGACTCCTAAGACGCTGGCCATACCATGCCCGTACGGTTACACCCGGGCATGTAAAAGATTCTCGCACGCGTCCATCCAATGGCTAGAATGGATCATGGCGaaagaaaaaatctttattcagcACGCTATAAATAGGGGGGAAAAACAGATCAGTCCTTTTTTTGTAGACGGTTACGCCGAGATTGACGGAGAAAAGTACGCGTGGGAATATCACGGGTGCTTTTACCACGGGTGTCCGACATGTTTTGACCCTGCGGAGACGTGCCCGTTGAGAGGCGTCAGATTCAGCGAATTATGGTTGAACAGCGAGGAGAGAGTGAGGACGTTAGAGTCCGAACATGGCGTCCGCGTGATGGTGGTGAGAGAACACGAGTGGCTCGAGATGAAAAAATCTTGCGATCGTGTCAAAGAGTTTCTCCGTACGTTTAATCCTCCAGAGCCTCTGGTCCCTTGCGCCGCTCTTTACAGAGGTCGAACAAGCGCTCTTAAGCTGAGACACACAGCGGGGCCTGGGGAAAAGGTGCTCTACGTTGACGTCACCTCTCTATATCCATACGTTAACAGCGCATGCTCTTATGCCTTAGATCACCCTACTATCATATACAAAGATTTCGGAGACCCTAGAAAttactttggtctcatcagagcCACAGTCTACCCGCCTCGTGGGctctttttccctgttttacCGTACAAAAGCAAGAGCAGTAAATTGCTCTTTCCTCTGTGTCGCACATGTGCAGAATGATGCATGCAGAGAGACCCTTGCTCGCATGACGATGACGCCCGAGCATTCACGGGTGTGTGGGTCACTGTAGAATTTAACAAAGCCTTGGAGATGGGCTACAGAGTGGCTAAAATCACGGCGGTATGGCACTTCGATAAAAGCAGCGACTCTGTGTTCACAGGGTACGTACAcgcatttttaaaaggaaagcaGGAAGCGTCCGGTTACCCGCCCAAAGCTAAGGATTGGGTCAGCAGGGAGAGGTATGTCAGTGAGTATCTGGAGCGTCAGGGGGTCCGATTAGACCCTGAAAAGATAGAGGCGAATCCGGCCAAGAGACAGGTGGCTAAACTCTGTCTCAATAGTCTTTGGGGGAAGTTTGCTCAGAGAGACGATCTGCTCTGCACCTAGATAGTATCGGATCCTGAAAAGTTTTTCAGCTATCTGTTTTCCAGTAAATACGTGATCGATTACTTTGATGTTCTGGACGACCAGAGAGCATTGATCAGGTGGGCGACCATTGCATTCAACCCCCAGGCAGAAGGAGTAATGTGTTCATAGCCGCATTCACCACCGCCCATGTGCGTCTCAAACTGTACAGCTACCTGGAAAGGTTGAGGGACAGAGTTCTTTACACAGACACGGATAGTTTAATTTATGTGGTGAAGGAGGGGGAGACCAAGAGTTACGCCTAtcagacaaagaataaaaaaaagtggtgatgCACGTCAAAGGGATCACACAGACCGTAGAATGTAGTGAGAGAATCGACTTTGACAGCGTCAGAGATCTGGTGGGGGATTACCTAAAGATCTCCGGGGAGGGAGGGGTGCCGGGCGCTATCGAGATCCCTCAGCATGGAATAACTCGTGATAAAAAGGGTTTCTCGTTAAAAAACTCgacatttcagaaaaagttTCAGGTTGTATACGACAAAAGACAACTCTTTCCAGACGGTACTACTCTGCCATTCGGATattaatctatatatatatttttttttggaggggcaaataaataaataaaatgtcacatctcGAGGTTATAGAAGAAACAGATTTCGAACACAGGTTTGTCTGTCCTTTCTCTTGTATAATAGCGGGCCCTAGTGGCTGTGGGAAAACCTGTTTTGTAAAGAGTGTACTGGAATGTTCTGAACGTGTCATGAATGTCGTACCCGAAAACATTGTATGGGTCTACACTTCTTACCAGCCTATGTATGATGAAttgcagaaaatgaataaaaaagataaaatttgtCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111372 lncRNA downstream 8389 4217578 ~ 4217842 (-) False LOC113534736
TU111366 lncRNA downstream 42238 4183755 ~ 4183993 (-) True G93716
TU111360 lncRNA downstream 53919 4172073 ~ 4172312 (-) True G93710
TU111357 lncRNA downstream 70734 4155257 ~ 4155497 (-) True G93707
TU111341 lncRNA downstream 152698 4073215 ~ 4073533 (-) False LOC117597611
XR_004578376.1 lncRNA upstream 144 4231460 ~ 4231831 (-) True LOC117597614
TU111413 lncRNA upstream 315123 4546439 ~ 4546705 (-) True G93753
TU111561 lncRNA upstream 552609 4783925 ~ 4785131 (-) True G93896
TU111595 lncRNA upstream 662270 4893586 ~ 4894074 (-) True G93926
XR_004578349.1 lncRNA upstream 735318 4966634 ~ 4971603 (-) True LOC117597587
XM_026927690.2 mRNA downstream 5624 4217018 ~ 4220607 (-) True LOC113534736
XM_026927691.1 mRNA downstream 31179 4191685 ~ 4195052 (-) True LOC113534737
XM_034305341.1 mRNA downstream 76821 4143231 ~ 4149410 (-) True LOC113534616
XM_026927535.2 mRNA downstream 85629 4137160 ~ 4140602 (-) True LOC113534615
XM_034305057.1 mRNA downstream 92171 4131265 ~ 4134060 (-) True LOC117597529
XM_034305026.1 mRNA upstream 25001 4256317 ~ 4270798 (-) False LOC113534733
XM_034305025.1 mRNA upstream 25001 4256317 ~ 4270798 (-) True LOC113534733
XM_034305024.1 mRNA upstream 38163 4269479 ~ 4273667 (-) True LOC117597527
XM_034305425.1 mRNA upstream 62739 4294055 ~ 4297771 (-) True LOC117597581
XM_026927598.1 mRNA upstream 97901 4329217 ~ 4332931 (-) True LOC113534650
TU111361 other downstream 52637 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 694540 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1457933 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1475062 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 2457436 1768405 ~ 1768795 (-) True G92531
XR_004578382.1 other upstream 261230 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 1962759 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2633952 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2916628 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 3211057 7442373 ~ 7614096 (-) False shank3a

Expression Profile