RNA id: XR_003403938.2


Basic Information

Item Value
RNA id XR_003403938.2
length 1431
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id LOC113539580
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17345629 ~ 17354761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGACATTACCATGGCTGTTGGGAAAGACAAGGATGACAAATTGTTTCAAGACTTACTGCAGTAGAAGTACACCAGACTGCCCCAGGGGTACAAAGAAAGTCCAAGCATCTTTAATAGGGTGGTGAAGGACAATCTCTCATCCCTGGACCTAGAAAGCACAGTTGTGCAGTATGTAGATGGCCAACTGGTCCGCAGCCCCAATCAGCAGCAGGGCTGAGAAGATTCACTGAAACTACTAAAACATCTCACAGAGAAGGGTTACGAACTGGACAAAGCCAAGTTACAGTACGTTAAGAGGGTGAgtggtgttgttgtttgtgGCGGCTCAAGCCCTGCCCCTTTTGTCTCaaaatgtaaatcattattAACAAACTTGAAATGAATAGTACAAATGTGCATGATAATGAGGTTTTTGGCAGAAGCAGTGGAGCCGTAGGCGGAGGTTTCTTTACAGTGCTACGCAGCAGTGACTTACCTGCGAGTCTTCGAATTACTTCACAAGCCGCAGGTGAAGGAGGCCAACCAATCTCACAAAGAACCTGTGAAGCCTGAGAACCTGCCAAAGCCAGATGACTGGGTCTCTGTGAAGGTGCACAAGAGAAAGTGGGCTGAGCCAATGGTGCAAGGACCATACAAGcatcCCGCAAGTCTTCCTATGAAACTTGTAACTTCTGAGAAGAAAATATTCTGAGCCTGATAGGGCCCaacagagaaggagaaaagcAAGTTCAGAAGCAATTAACAGTAAGGAAGAGAGGATTCTGTGGCAGACTGCAAAAGTGGAACTCAAGTCAAATGTGGAAGATGGTTAGAACTCTGATACCCCCACATAAAGACAAGACATGGTTTCACCAGGTTCCAGTCCATTACGCCTGCGCCGCGCAAGCTGATGACATCTTAAGGATTCACCGCCATGGGCTCATGTTTGCCAGCACAGCTCCAAGGGACCCGGTTACACCAACAAATAACACAGACGAttaacaataaaacataaaacaaatgaaaaatgagtaTGTGTGATATGTCCAGAGGGAATAATGGAAGGAGGGTATGAAATGTGGACGAATGACCAAGCGCTATCAGATTGCGTGTGCACCCGCTTTCCAAACAGCATTACGAGGTAACGGATGGGTGCGTGtggtgaatgaatgtgtgtaagtGCATCCATATGTGCACCAGTGCTGTCGCTTGCAGCGGTGAAGGTCACTTCTTCACAGTTTGTTAcacttaacaaaaaaataaaatatttcaggttgAGAGAAATGACCAATAATGGAAAACCTTTTGATCAGCAAGGTATCACTAAGGTGAGAAATTTCACACCAACATGTGAAACTGTTCCCAGGCAGAAGAGGATTATTCACCATGAAAACACTGGAGGTTAATATTCAGTATATGCTCATCTCAAAGTGGTACATAACAAGACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119311 lncRNA downstream 81220 17249178 ~ 17264409 (-) True G100663
TU119295 lncRNA downstream 156196 17188158 ~ 17189433 (-) True G100648
TU119276 lncRNA downstream 194451 17150897 ~ 17151178 (-) True G100629
TU119251 lncRNA downstream 230295 17115115 ~ 17115334 (-) True G100604
TU119022 lncRNA downstream 411807 16920567 ~ 16933822 (-) True G100408
TU119386 lncRNA upstream 52329 17407090 ~ 17407386 (-) True G100727
TU119395 lncRNA upstream 101291 17456052 ~ 17457045 (-) True G100735
TU119402 lncRNA upstream 138651 17493412 ~ 17493623 (-) True G100739
TU119413 lncRNA upstream 188380 17543141 ~ 17543353 (-) True G100748
TU119429 lncRNA upstream 243728 17598489 ~ 17602770 (-) True G100764
XM_026935694.2 mRNA downstream 37727 17088641 ~ 17307902 (-) False LOC113539712
XM_026935693.2 mRNA downstream 37727 17088641 ~ 17307902 (-) True LOC113539712
XM_026935696.2 mRNA downstream 99162 17088641 ~ 17246467 (-) False LOC113539712
XM_026935698.2 mRNA downstream 111926 17088641 ~ 17233703 (-) False LOC113539712
XM_026935695.2 mRNA downstream 116685 17088641 ~ 17228944 (-) False LOC113539712
XM_034305181.1 mRNA upstream 67600 17422361 ~ 17478283 (-) True alpk3a
XM_034305183.1 mRNA upstream 67600 17422361 ~ 17477608 (-) False alpk3a
XM_034305182.1 mRNA upstream 68688 17423449 ~ 17478285 (-) False alpk3a
XM_034305437.1 mRNA upstream 365784 17720545 ~ 17725320 (-) True LOC117597582
XM_034305438.1 mRNA upstream 365784 17720545 ~ 17725315 (-) False LOC117597582
TU118530 other downstream 1990992 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 2998621 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 3556782 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 3557430 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 3557843 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 731894 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 832686 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 1996001 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 2625308 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 3598841 20953602 ~ 20966910 (-) True G102566

Expression Profile