Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578301.1 |
| length | 432 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117597514 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 28259697 ~ 28261304 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125776 | lncRNA | downstream | 161703 | 28097773 ~ 28097994 (-) | True | G106356 |
| TU125726 | lncRNA | downstream | 180822 | 28038090 ~ 28078875 (-) | True | G106319 |
| TU125749 | lncRNA | downstream | 188827 | 28069599 ~ 28070870 (-) | True | G106336 |
| TU125671 | lncRNA | downstream | 291496 | 27967982 ~ 27968201 (-) | True | G106269 |
| TU125667 | lncRNA | downstream | 293446 | 27965063 ~ 27966251 (-) | True | G106265 |
| TU126111 | lncRNA | upstream | 338815 | 28600119 ~ 28601535 (-) | True | G106653 |
| TU126113 | lncRNA | upstream | 343009 | 28604313 ~ 28605437 (-) | True | G106655 |
| TU126114 | lncRNA | upstream | 344954 | 28606258 ~ 28608041 (-) | True | G106656 |
| TU126115 | lncRNA | upstream | 347642 | 28608946 ~ 28609764 (-) | True | G106657 |
| TU126118 | lncRNA | upstream | 352963 | 28614267 ~ 28614543 (-) | True | G106660 |
| XM_026913722.2 | mRNA | downstream | 26310 | 28229438 ~ 28233387 (-) | True | foxf1 |
| XM_026913729.2 | mRNA | downstream | 54071 | 28183533 ~ 28205626 (-) | False | LOC113526564 |
| XM_026913728.2 | mRNA | downstream | 54073 | 28183533 ~ 28205624 (-) | True | LOC113526564 |
| XM_026914328.2 | mRNA | downstream | 319875 | 27925890 ~ 27939822 (-) | True | LOC113526894 |
| XM_026913761.2 | mRNA | downstream | 381078 | 27865109 ~ 27878619 (-) | True | zdhhc7 |
| XM_026914417.2 | mRNA | upstream | 153831 | 28415135 ~ 28422985 (-) | True | irf8 |
| XM_026914419.2 | mRNA | upstream | 162493 | 28423797 ~ 28446913 (-) | True | dusp22a |
| XM_034305449.1 | mRNA | upstream | 168767 | 28430071 ~ 28446938 (-) | False | dusp22a |
| XM_026914421.2 | mRNA | upstream | 187435 | 28448739 ~ 28452315 (-) | True | LOC113526963 |
| XM_034305534.1 | mRNA | upstream | 206454 | 28467758 ~ 28711935 (-) | False | gse1 |
| TU125182 | other | downstream | 1102557 | 27152312 ~ 27157140 (-) | False | si:dkey-151j17.4 |
| TU124747 | other | downstream | 1651368 | 26569085 ~ 26608329 (-) | False | LOC113526510 |
| TU124615 | other | downstream | 2018692 | 26239330 ~ 26241005 (-) | True | G105376 |
| XR_003402762.2 | other | downstream | 2710769 | 25385325 ~ 25548928 (-) | True | si:cabz01090165.1 |
| TU126682 | other | upstream | 1440848 | 29702152 ~ 29713992 (-) | False | hipk3b |
| TU127077 | other | upstream | 2082227 | 30343531 ~ 30344876 (-) | True | G107525 |
| TU127397 | other | upstream | 2468654 | 30729958 ~ 30732031 (-) | False | bbs10 |
| TU127465 | other | upstream | 2555275 | 30816579 ~ 30819614 (-) | True | G107803 |
