Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578333.1 |
| length | 674 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | LOC117597554 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 489562 ~ 490796 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04113 | Meiosis - yeast |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109450 | lncRNA | downstream | 94298 | 393032 ~ 395264 (-) | True | G92197 |
| TU108981 | lncRNA | downstream | 190465 | 298547 ~ 299097 (-) | True | G91873 |
| TU108859 | lncRNA | downstream | 305766 | 183534 ~ 183796 (-) | True | G91786 |
| TU108826 | lncRNA | downstream | 404017 | 84295 ~ 85545 (-) | True | G91764 |
| TU108814 | lncRNA | downstream | 426288 | 53728 ~ 63274 (-) | True | G91752 |
| TU109484 | lncRNA | upstream | 113254 | 604050 ~ 606076 (-) | True | G92220 |
| TU109526 | lncRNA | upstream | 215954 | 706750 ~ 708348 (-) | False | G92240 |
| TU109536 | lncRNA | upstream | 224024 | 714820 ~ 715497 (-) | True | G92247 |
| TU109520 | lncRNA | upstream | 240319 | 731115 ~ 732765 (-) | True | G92236 |
| TU109525 | lncRNA | upstream | 254731 | 745527 ~ 773557 (-) | True | G92239 |
| XM_034305313.1 | mRNA | downstream | 165622 | 266207 ~ 323940 (-) | True | dmxl2 |
| XM_034305306.1 | mRNA | downstream | 242252 | 238677 ~ 247310 (-) | True | LOC113534440 |
| XM_026927244.2 | mRNA | downstream | 266178 | 198973 ~ 223384 (-) | True | tnfaip8l3 |
| XM_034305451.1 | mRNA | downstream | 311918 | 177113 ~ 177644 (-) | True | LOC117597586 |
| XM_034304930.1 | mRNA | downstream | 334418 | 154067 ~ 155144 (-) | True | LOC117597506 |
| XM_034305286.1 | mRNA | upstream | 32658 | 523454 ~ 660554 (-) | False | LOC113534387 |
| XM_034305284.1 | mRNA | upstream | 32658 | 523454 ~ 660547 (-) | False | LOC113534387 |
| XM_034305287.1 | mRNA | upstream | 32658 | 523454 ~ 660547 (-) | False | LOC113534387 |
| XM_034305280.1 | mRNA | upstream | 32658 | 523454 ~ 660546 (-) | True | LOC113534387 |
| XM_034305291.1 | mRNA | upstream | 32658 | 523454 ~ 660546 (-) | False | LOC113534387 |
| TU108961 | other | downstream | 165952 | 302636 ~ 323610 (-) | False | dmxl2 |
| TU108836 | other | downstream | 344601 | 143425 ~ 144961 (-) | True | LOC113534658 |
| TU109527 | other | upstream | 215954 | 706750 ~ 710654 (-) | True | G92240 |
| TU109528 | other | upstream | 216964 | 707760 ~ 747530 (-) | False | G92240 |
| XR_003402800.2 | other | upstream | 345698 | 836494 ~ 846935 (-) | False | slc27a2a |
| TU109708 | other | upstream | 491271 | 982067 ~ 989056 (-) | True | G92340 |
| TU109707 | other | upstream | 492671 | 983467 ~ 989056 (-) | False | G92340 |
