RNA id: XR_004578344.1


Basic Information

Item Value
RNA id XR_004578344.1
length 2037
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id LOC117597583
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25192057 ~ 25214790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaaagggaagagCTTAGAGCTGTACTGAGAGGGAAAGAAGAGACagaccaaacaggaagtgaaaaggagaaaagaagacTTTGGTAGGATCTAAAGGAATTATATGCCAGGAGTGCTAACCAGAATCCTCCTTCTTTTCTAGAAGAAATGACATAAAGAGCAATTTTTTGCCTGCAACCACCGTCATTCTCCTGCTCCACTGTACCTCCGTCGGACCTAGAACTTTGCTGAACCCCTGATGCTTGGATACATCTATCATTTACCTGTACTCCTGGAAGTTTCTGAATCAATAGAGGAAAAGAAACAGGAAGAAGCATGAACTCTTTTTTTGAATCTGCAAACTTGAACCATTCTTAAGGTATGAAGACTCTAAGGGGGTTGTACCTGTAGCGCACAAAGGGATGTACGCAGGTTTGCTTGATAAAGTCATAGCCATAAAGATGATGGGGACAACAAGAAAATGAGATTCACTTTAAGTGACTTAAATGAAAGAATCATGCAGATTGGCATGTTGGAAGACAACCACATGCTGTCCGATGCCTCATAACACAGGCAAACACATAAAGAAGACAATATTTTAGCATCTCTGCAAGACCAAACTAACTACTCCACAAGGTTTGGCTAAATCCTCAGAACAATCCCTTTCCCTGATCTTATGACAGACTACAAGTTTTAGGAACCTGTCAGAAGCCTGTTGTGTGGGAACGAGAACGAAAAGAAGACCTCCAAGACATcgtggagaagaagaagaggaagaagtaAAGAACCAGGAGAAAGGGACAGACAGCCAGAACTGGCTGTGGCAGGAACAAGGGAGCAGGGGGAAAGGGTAAAGGAGAGATGGGACTTCAGGGGCATTTGTGAAGGCTTGAAACAATGGAAGCAGCTCCGAAATAAAAAGCAGAACAGGGAGTCCCTGCAGTCCGCCTGGTACAATGTGTGCAGGTGTGGTGCCCCCTGGAGGTGGAAATCACTGATGATAAACATGCTCCCCCATGGCCTTGCTCACACGTGCCGGGCCATCGAGGAGGAGCAGGACAACGACAGAGAGGAGAGGATCTTGGCTATCCTGGGAATAGTTGGCACCATTCTCAACCTGCTGGTGGTCATCTTTGTCTACATCTACACCACCATCTGAAGACTGGAGTGGGACACGAAAAGCCATCCAGAGATTTGAGAAGGAAGGAAATCAGACTGGAAAGATTCAGTTTGTGTATACACTCAGTGAGGACAGGAGAAGATGAGAAGAATGGACTAATGGACTACTTCATTTGCCAAAAAATGTGTATTCACAATCATCATTTATGCAAAGTAAATCTGAATAGTGTCCACCATTTTCACCATTAATTTCAAAAGACCCCAATTTAAACTCTCATTATTAcctttaaatgctttacctACTAAGTTATGCTGTAAAtatttgaccatggcatggcaTCCTAGTATATTTCTCATGGCATGGCATTCTAATATATTTCTTATGCAACTGATTTAACATTTTAGAGACGGTTAAGTGTTCGCCAGCTTTAACGACAACCCTTTCAACACGAAGCACTGCAGATAATGGAGGCATCTGCTCAGGAGACAGCTGCAACACTTGCTGGATGTCTTACTTTGAGCAAATCTGGTGAAAGGAGGGACATTTCCCTGAAATATGCAAACAGGACAGCATACGTTGGCTCCATCTGCAATACTAAAGGAATAAATCTCAACATGTACTTTATACTTAATGAGCTTTTCTCAATTAACAAAGTTGACAAAACATGATATTGAGATTCCTATATGGAAGACATGCTAAGAGGCAAACTTAGCTTCTTTGGTTTACAGTATATGGTTATTCCTATGCCTAAGCAGGATCTGTAGATGTGTTCATGCTTTGCATCATTCAATGGGCagaaaagtggattattttggatgttCTGTTTCACATGGCTTTTCTATAGCTTTATCAAACCATTAAAATGGAGGTAAAGTTTGCACGGTATTATAAGCACCTAAAGCAAAACGGAATGGAATAAAGTTACAAAGAATTGCAAA

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123870 lncRNA downstream 40901 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA downstream 40901 25146360 ~ 25151156 (-) True G104694
TU123851 lncRNA downstream 112570 25043786 ~ 25079487 (-) False tmem91
TU123618 lncRNA downstream 530709 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 657638 24533737 ~ 24534419 (-) True G104320
TU123929 lncRNA upstream 24320 25239110 ~ 25241770 (-) True G104747
TU123932 lncRNA upstream 28682 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA upstream 28682 25243472 ~ 25244017 (-) False G104750
TU124309 lncRNA upstream 618489 25833279 ~ 25836038 (-) True G105092
TU124447 lncRNA upstream 872690 26087480 ~ 26087695 (-) True G105219
XM_026913566.2 mRNA downstream 9950 25156153 ~ 25182107 (-) False rasgrp4
XM_026913565.2 mRNA downstream 9950 25156153 ~ 25182107 (-) False rasgrp4
XM_026913564.2 mRNA downstream 9950 25156153 ~ 25182107 (-) False rasgrp4
XM_026913563.2 mRNA downstream 9952 25155182 ~ 25182105 (-) True rasgrp4
XM_026913560.2 mRNA downstream 56801 25106429 ~ 25135256 (-) True ppp1r13l
XM_034305513.1 mRNA upstream 80668 25295458 ~ 25301413 (-) True LOC117597607
XM_034305278.1 mRNA upstream 89946 25304736 ~ 25319693 (-) False LOC113526534
XM_026913665.2 mRNA upstream 89946 25304736 ~ 25319693 (-) False LOC113526534
XM_026913666.2 mRNA upstream 89946 25304736 ~ 25319682 (-) False LOC113526534
XM_026913667.2 mRNA upstream 89946 25304736 ~ 25309948 (-) True LOC113526534
XR_003402792.2 other downstream 429276 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 480689 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1581609 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2885288 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4178957 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 170535 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 170535 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 170535 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1024540 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1354295 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile