Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578372.1 |
| length | 516 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 5 |
| gene id | LOC117597606 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 27143707 ~ 27144874 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU125118 | lncRNA | downstream | 14535 | 27123277 ~ 27129172 (-) | True | G105842 |
| TU125109 | lncRNA | downstream | 36136 | 27105368 ~ 27107571 (-) | True | G105835 |
| TU124929 | lncRNA | downstream | 267873 | 26875595 ~ 26875834 (-) | True | G105666 |
| TU124902 | lncRNA | downstream | 323990 | 26819466 ~ 26819717 (-) | True | G105639 |
| TU124897 | lncRNA | downstream | 354851 | 26787940 ~ 26788856 (-) | True | G105634 |
| XR_003402778.1 | lncRNA | upstream | 43468 | 27188342 ~ 27188792 (-) | True | LOC113526487 |
| TU125590 | lncRNA | upstream | 634258 | 27779132 ~ 27781800 (-) | True | G106193 |
| TU125592 | lncRNA | upstream | 716966 | 27861840 ~ 27905029 (-) | True | G106195 |
| TU125660 | lncRNA | upstream | 799942 | 27944816 ~ 27945033 (-) | True | G106258 |
| TU125661 | lncRNA | upstream | 808644 | 27953518 ~ 27953990 (-) | True | G106259 |
| XM_034305079.1 | mRNA | downstream | 112 | 27138247 ~ 27143595 (-) | True | LOC117597534 |
| XM_034304982.1 | mRNA | downstream | 5369 | 27132129 ~ 27138338 (-) | True | LOC113526953 |
| XM_026913390.2 | mRNA | downstream | 295744 | 26827024 ~ 26847963 (-) | True | pkma |
| XM_026913391.2 | mRNA | downstream | 295744 | 26827024 ~ 26847963 (-) | False | pkma |
| XM_026913543.2 | mRNA | downstream | 451972 | 26680356 ~ 26691735 (-) | False | rec114 |
| XM_034304983.1 | mRNA | upstream | 14 | 27144888 ~ 27160099 (-) | True | si:dkey-151j17.4 |
| XM_034304984.1 | mRNA | upstream | 30393 | 27175267 ~ 27186037 (-) | True | LOC113526685 |
| XM_026913304.2 | mRNA | upstream | 49045 | 27193919 ~ 27202055 (-) | True | LOC113526349 |
| XM_034305032.1 | mRNA | upstream | 58893 | 27203767 ~ 27297171 (-) | False | LOC113526686 |
| XM_034305048.1 | mRNA | upstream | 58893 | 27203767 ~ 27294632 (-) | False | LOC113526686 |
| TU124747 | other | downstream | 535378 | 26569085 ~ 26608329 (-) | False | LOC113526510 |
| TU124615 | other | downstream | 902702 | 26239330 ~ 26241005 (-) | True | G105376 |
| XR_003402763.2 | other | downstream | 1594779 | 25385325 ~ 25548928 (-) | False | si:cabz01090165.1 |
| TU125182 | other | upstream | 7438 | 27152312 ~ 27157140 (-) | False | si:dkey-151j17.4 |
| TU126682 | other | upstream | 2557278 | 29702152 ~ 29713992 (-) | False | hipk3b |
| TU127077 | other | upstream | 3198657 | 30343531 ~ 30344876 (-) | True | G107525 |
| TU127397 | other | upstream | 3585084 | 30729958 ~ 30732031 (-) | False | bbs10 |
| TU127465 | other | upstream | 3671705 | 30816579 ~ 30819614 (-) | True | G107803 |
