Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU154763 |
| length | 747 |
| RNA type | TUCP |
| GC content | 0.36 |
| exon number | 4 |
| gene id | porcn |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 11705547 ~ 11714032 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU154744 | lncRNA | upstream | 19780 | 11677903 ~ 11689674 (+) | False | uck2a |
| TU154619 | lncRNA | upstream | 157423 | 11548962 ~ 11552031 (+) | True | G130960 |
| XR_004578615.1 | lncRNA | upstream | 350074 | 11355449 ~ 11359380 (+) | True | LOC117597850 |
| XR_003402857.2 | lncRNA | upstream | 761108 | 10944657 ~ 10948346 (+) | True | LOC113527270 |
| TU154234 | lncRNA | upstream | 792829 | 10916337 ~ 10916625 (+) | True | G130618 |
| TU154767 | lncRNA | downstream | 6287 | 11716832 ~ 11717885 (+) | True | G131061 |
| TU154974 | lncRNA | downstream | 271220 | 11981765 ~ 11988425 (+) | False | foxp3a |
| TU154975 | lncRNA | downstream | 282274 | 11992819 ~ 11993039 (+) | False | foxp3a |
| TU154976 | lncRNA | downstream | 283869 | 11994414 ~ 11994800 (+) | False | foxp3a |
| TU155067 | lncRNA | downstream | 506459 | 12217004 ~ 12217214 (+) | True | G131279 |
| XM_026924198.2 | mRNA | upstream | 10086 | 11696883 ~ 11699368 (+) | True | magoh |
| XM_026926870.2 | mRNA | upstream | 12663 | 11677511 ~ 11696791 (+) | True | uck2a |
| XM_034306529.1 | mRNA | upstream | 12663 | 11677812 ~ 11696791 (+) | False | uck2a |
| XM_026921520.2 | mRNA | upstream | 75610 | 11622310 ~ 11633844 (+) | False | LOC113530800 |
| XM_026921446.2 | mRNA | downstream | 4398 | 11714943 ~ 11716674 (+) | True | spryd4 |
| XM_034306594.1 | mRNA | downstream | 27794 | 11738339 ~ 11763591 (+) | True | col2a1a |
| XM_034306595.1 | mRNA | downstream | 27794 | 11738339 ~ 11763591 (+) | False | col2a1a |
| XM_034306367.1 | mRNA | downstream | 55495 | 11766040 ~ 11791173 (+) | True | cry3a |
| XM_034306366.1 | mRNA | downstream | 55495 | 11766040 ~ 11791173 (+) | False | cry3a |
| TU154756 | other | upstream | 22 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154757 | other | upstream | 22 | 11705655 ~ 11709432 (+) | False | porcn |
| TU154760 | other | upstream | 1493 | 11705655 ~ 11707961 (+) | False | porcn |
| XR_003403321.2 | other | upstream | 75610 | 11622302 ~ 11633844 (+) | False | LOC113530800 |
| XR_003403311.2 | other | upstream | 75610 | 11622310 ~ 11633844 (+) | True | LOC113530800 |
| trnad-guc_1 | other | downstream | 671454 | 12381999 ~ 12382070 (+) | True | trnad-guc_1 |
| trnav-cac_9 | other | downstream | 1351391 | 13061936 ~ 13062008 (+) | True | trnav-cac_9 |
| trnaf-gaa_25 | other | downstream | 1353505 | 13064050 ~ 13064122 (+) | True | trnaf-gaa_25 |
| trnae-cuc_18 | other | downstream | 1659003 | 13369548 ~ 13369619 (+) | True | trnae-cuc_18 |
| TU156117 | other | downstream | 1994711 | 13705256 ~ 13707550 (+) | False | LOC113527348 |
