RNA id: TU155890


Basic Information

Item Value
RNA id TU155890
length 1741
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G131947
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13437922 ~ 13439730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCAAATCTAAGAACGTGATAGATAGTGACCTTCCATACAATGCATATTCATTTCAGGGGTGACTAAAATGTTTgccttgtaattttttttttttttttttagtatttcatatattctcataaatcatttgttatatgattatataaatcTCAATTCCTCACATGATAGACTccctctttcacacacaaacacacgcacaacaGCAAGCAGGTCCTAAAAAAATCACGCACAGAAACCGTATactctttttgtttcatttttttctacttttaacAGTAAATCAGTAACATTAATTTTTCAGGTTACACATTTGAGGCGTTCTCAGTTATTATATGCTCCTACATTAAAGCTTAGCATTATACTCAGGATGAGGGGAAGAAAAGATCAATAAACTGAATTCTGTTAAGAAAGGATGAGAAACAAACATTGGAAGTGACGCACCTAAACTGATTTCAGTAAGCAGTGAATGCTACATTTCTCTTAAGTTGGCTTGAGCAAAGAAATAACAACCTCTGCTGGACATCAGTGGAACAGTACAGTTAGAATGCTGCTTTCGAACCATAAGCAGAGTAAAACAAATCATAGCACTTGGCTCAGAACCATAACTCAGACAATATTTTTCCTCTTCACTTCAGCCAGTGATGATGTTGACTTCCCTTGGGTTGAGGGTGCACGGGATGTCTTTTCCCTGATTATGCTGTTGAGGTATAGTACAGCAATTATTTAACGGTTTTGATGACAAAAtagctttaaaatgttaagGCTCCGAGCatgaaaagtaaatgaaaagcaaaatctTGTGACCAATATGACTTCCCAGAAAAAAGTTATAAGCTGAGTGTTACATAATTCAAAAATATAGTTTTCTTTTACAGCAACATTATCATCATGTATCAAGACACATTTCTCTGTCCCTTATACGCAGTGGCACATGTACTCCTCAGTCAACCCCTTTCAAATCCCTACAACCAACAACAAAGATGCACATTTTGATTGTACAAAATTCAACTGGCCAAGTACAGTGACTGATGCTGGGGAGGAGTCTACGGTGCTTCCAGATTAGTCTTTTCCTCACCTTACCAACCACCATGTCAACACATacttacaaacacacatcttGGGCTTTTAACAGTCACTGACTGACTTTGACTCTCACAGCCAGTGGCAGATAACTGTTGGCCAAAGTCGGTTATGTAAAGAAGGAGGGAGGTGTGTGGAAACCAAACCAAATgacaaaagagagacaaagatgaTCACGGTGCCATTATTTGATAGGCGCTAATTGATTTCATCTCCAACGGAGCTGGAACCAGAACCAGTAGGGCAGAGCCTTGAGTTTGATGCTGGCCCAAGTCCCCAGAATTAAATAGacaactgtttatttttcttttttaaaatttcttcttGTGtcctgttttttaaatttcattttcaaatggTCAGTCCTAAAACAGTTGCTCAAGCTATTGGGATGAGGTGCAGTCTTCTATTGTTTACTTCGATTTTGGCGTTCctggaagaaggaaaaaagacgGAAGGTGTTCAAAGGTGATGGCTGCCATACACGTTTCATTAGATCATGGCCCTTGTACTGCATGACCAATACAAGATATCCGTATTCCACCAACGAAGGTCCACACTCCCACTACAACCCCCAATTTAAACTGTTTACCTGATCCAGACGTGACCGATTCTGGGAGGAAGTGGGTTCATAGTTCtgtcaataaagaaatgaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155891 lncRNA upstream 964 13435501 ~ 13436958 (+) True G131948
TU155938 lncRNA upstream 2628 13433917 ~ 13435294 (+) True G131987
TU155931 lncRNA upstream 15708 13420705 ~ 13422214 (+) True G131980
TU155919 lncRNA upstream 37642 13392525 ~ 13400280 (+) True G131972
TU155912 lncRNA upstream 69746 13365880 ~ 13368176 (+) True G131968
TU156048 lncRNA downstream 60659 13500389 ~ 13500683 (+) True G132081
TU156088 lncRNA downstream 130662 13570392 ~ 13570972 (+) True G132115
TU156119 lncRNA downstream 350741 13790471 ~ 13791279 (+) False LOC113527348
TU156121 lncRNA downstream 352132 13791862 ~ 13792709 (+) True G132139
TU156118 lncRNA downstream 353426 13793156 ~ 13794305 (+) True G132136
XM_026926538.2 mRNA upstream 51537 13372493 ~ 13386385 (+) False tpd52l2a
XM_026912780.2 mRNA downstream 24401 13464131 ~ 13489999 (+) True si:dkey-70p6.1
XM_026912789.2 mRNA downstream 24401 13464131 ~ 13489999 (+) False si:dkey-70p6.1
XM_034306380.1 mRNA downstream 83991 13523721 ~ 13541674 (+) False emilin3a
XM_026924721.2 mRNA downstream 97681 13537411 ~ 13541674 (+) True emilin3a
XM_026913672.2 mRNA downstream 176874 13616604 ~ 13685739 (+) False magixa
trnae-cuc_18 other upstream 68303 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 373800 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 375914 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1055852 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1727377 11709454 ~ 11710545 (+) False porcn
TU156117 other downstream 265526 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 882442 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1540103 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2562331 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2562331 16002061 ~ 16018783 (+) True G133631

Expression Profile